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Report for CCDS89397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89397.1 Public Mus musculus 19 Pax2 23 108 98 CCDS HistoryNCBI Gene:18504Re-query CCDS DB by CCDS ID:89397.1Re-query CCDS DB by GeneID:18504See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 89397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004340.10 ENSMUSP00000004340.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004340.10Link to Ensembl Protein Viewer:ENSMUSP00000004340.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000004340Re-query CCDS DB by Protein ID:ENSMUSP00000004340
Original member Current member NCBI NM_001368746.1 NP_001355675.1 Accepted alive Link to Nucleotide Sequence:NM_001368746.1Link to Protein Sequence:NP_001355675.1Re-query CCDS DB by Nucleotide ID:NM_001368746Re-query CCDS DB by Protein ID:NP_001355675Link to BLAST:NP_001355675.1

Chromosomal Locations for CCDS 89397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44757394 44757436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44760878 44761043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44761688 44761885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44788777 44788862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44790683 44790802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44796628 44796696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44815908 44816083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44818426 44818552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44833166 44833267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44835391 44835477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44835951 44836027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGATATGCACTGCAAAGCAGACCCCTTCTCCGCGATGCACCGGCACGGGGGTGTGAACCAGCTCGGGG
GGGTGTTTGTGAACGGCCGGCCCCTACCCGACGTGGTGAGGCAGCGCATCGTGGAGCTGGCCCACCAGGG
TGTGCGGCCCTGTGACATCTCCCGGCAGCTGCGGGTCAGCCATGGCTGTGTCAGCAAAATCCTGGGCAGG
TACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAG
TGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCT
GCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAGGATCATCCGGACC
AAAGTTCAGCAGCCTTTCCACCCAACGCCGGATGGGGCAGGGACAGGAGTGACTGCCCCCGGCCACACCA
TCGTTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAA
CGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAGTCGAGGTATACACTGAT
CCTGCCCACATTAGAGGAGGTGGAGGTTTACATCTGGTCTGGACTTTAAGAGATGTGTCTGAGGGCTCTG
TCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCA
GCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAG
CACATCAAATCAGAACAGGGGAATGAATACTCTCTCCCAGCCCTGACCCCTGGGCTTGATGAAGTCAAGT
CCAGTCTATCTGCATCGGCCAACCCTGAGCTGGGCAGCAATGTGTCAGGCACACAGACGTACCCCGTTGT
GACCGGTCGTGATATGACGAGCACCACTCTACCTGGTTACCCCCCTCATGTGCCCCCCACTGGCCAGGGA
AGCTACCCTACCTCCACCCTGGCAGGAATGGTGCCTGGGAGCGAGTTCTCAGGCAACCCATACAGCCATC
CCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAAGTTCCCCTTATTATTA
TAGTGCCGCCCCCCGGGGCTCCGCCCCTGCCGCTGCTGCCGCTGCCTATGACCGCCACTAG

Translation (416 aa):
MDMHCKADPFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR
YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRT
KVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKREEVEVYTD
PAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASE
HIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVVTGRDMTSTTLPGYPPHVPPTGQG
SYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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