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Report for CCDS89332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89332.1 Public Mus musculus 19 Lgals12 23 108 98 CCDS HistoryNCBI Gene:56072Re-query CCDS DB by CCDS ID:89332.1Re-query CCDS DB by GeneID:56072See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079902.5 ENSMUSP00000078824.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079902.5Link to Ensembl Protein Viewer:ENSMUSP00000078824.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079902Re-query CCDS DB by Protein ID:ENSMUSP00000078824
Original member Current member NCBI NM_001370686.1 NP_001357615.1 Accepted alive Link to Nucleotide Sequence:NM_001370686.1Link to Protein Sequence:NP_001357615.1Re-query CCDS DB by Nucleotide ID:NM_001370686Re-query CCDS DB by Protein ID:NP_001357615Link to BLAST:NP_001357615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357615.1 301 Q91VD1-2 301 100% 0 0

Chromosomal Locations for CCDS 89332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7598025 7598171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7598760 7598910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7600648 7600736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7601246 7601272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7603009 7603128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7603969 7604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7604304 7604392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7606662 7606730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGTCAACTGACGAACACCTGGACCCGATTCCTGACAGCTTCATCCTGCAGCCGCCAGTCTTCCACCCGG
TGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGT
CCCTCTGCATGCAAGGAGGTTTCAGGTGGACTTCCAGTGTGGGTGCTGCCTGCATCCTCAGCCAGATGTT
GCCTTCCGCTTCAGCCCTCGATTCTACACTGTCAAGCCCCATGTCATCTGCAACACCCACCAAGGTGGAC
TCTGGCAAAAAGAGATCCGGTGGCCAGGGGTCGCCCTGCAGAGAGGGGATAGCTTCCTCATTCTCTTTCT
CTTTGAGAACGAAGAGGTGAAGGTGAGTGTAAATGGCCAGCACTTTCTTCACTACCGCTACCGGCTCCCA
CTGTCACGGGTAGATACCCTTGACATATCTGGTGACATCTTGGTAAAGGCTGTTGGATTCCTGAACATCA
ATCCCTTCCTGCTGTATAGCCCCAGGCTGGAGGTGCCCTGCTCACGTGCTCTTCCTCGGGGTCTCTGGCC
TGGGCAAGTCATTGTAGTTCGAGGACTGGTCTTGAAAGAGCCGAAAGATTTTACCCTGAGCCTGAAGGAT
GGGACCACCCATGTTCCTGTGACACTCAGGGCTTCCTTCACAGACAGAACACTGGCCTGGGTCTCCTCCT
GGGGACGAAAGAAGCTGATCTCCGCCCCCTTCCTCTTTCACCCCCAGCGATTCTTCGAGGTACTGCTTCT
GTGCCAAGAGGGAGGGCTGAAGTTGGCACTCAATGGGCAGGGGCTGGGGGCCACCAGCCTGGACCAGAAA
GCCCTGGAGCAGCTGCGGGAGCTCAGGATCAGTGGAAATGTCCACCTCTACTGTGTCCACTGCTAA

Translation (301 aa):
MSTDEHLDPIPDSFILQPPVFHPVIPYGTTIFGGLYAGKMVTLQGVVPLHARRFQVDFQCGCCLHPQPDV
AFRFSPRFYTVKPHVICNTHQGGLWQKEIRWPGVALQRGDSFLILFLFENEEVKVSVNGQHFLHYRYRLP
LSRVDTLDISGDILVKAVGFLNINPFLLYSPRLEVPCSRALPRGLWPGQVIVVRGLVLKEPKDFTLSLKD
GTTHVPVTLRASFTDRTLAWVSSWGRKKLISAPFLFHPQRFFEVLLLCQEGGLKLALNGQGLGATSLDQK
ALEQLRELRISGNVHLYCVHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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