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Report for CCDS89250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89250.1 Public Mus musculus 18 Ppargc1b 23 108 98 CCDS HistoryNCBI Gene:170826Re-query CCDS DB by CCDS ID:89250.1Re-query CCDS DB by GeneID:170826See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063307.5 ENSMUSP00000069431.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063307.5Link to Ensembl Protein Viewer:ENSMUSP00000069431.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063307Re-query CCDS DB by Protein ID:ENSMUSP00000069431
Original member Current member NCBI NM_001364996.1 NP_001351925.1 Accepted alive Link to Nucleotide Sequence:NM_001364996.1Link to Protein Sequence:NP_001351925.1Re-query CCDS DB by Nucleotide ID:NM_001364996Re-query CCDS DB by Protein ID:NP_001351925Link to BLAST:NP_001351925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351925.1 1030 Q8VHJ7-2 1030 100% 0 0

Chromosomal Locations for CCDS 89250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61298683 61298783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61299586 61299740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61302619 61302740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61304708 61304783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61307207 61308014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61309033 61309094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61309646 61309682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61310407 61311508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61312154 61312270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61315737 61315949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61323135 61323308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61382445 61382523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61400290 61400336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3093 nt):
ATGAAGAGCTCTCGTCCTTCTTCCTCAACTATCTCTCTGACACGCAGGTCTGCAGAAGGCCTTGAAGAGG
TGGACCATGAAGCTTTGGATAGAGACGGTTGTGGAAGGAGAAGGTTGGCTGACATGGGTGGGGACTCTGG
AGAGGAACAGCTGTGTGCTGACTTGCCAGAGCTTGACCTCTCCCAGCTGGACGCCAGTGACTTTGACTCA
GCCACGTGCTTTGGGGAGCTGCAGTGGTGCCCGGAGACCTCAGAGACAGAGCCCAGCCAGTACAGCCCCG
ATGACTCCGAGCTCTTCCAGATTGACAGTGAGAATGAAGCTCTCTTGGCTGCGCTTACGAAGACCCTGGA
TGACATCCCCGAAGACGATGTGGGGCTGGCTGCCTTCCCAGAACTGGATGAAGGCGACACACCATCCTGC
ACCCCAGCCTCACCTGCCCCCTTATCTGCACCCCCCAGCCCCACCCTGGAGAGGCTTCTGTCCCCAGCGT
CTGACGTGGACGAGCTTTCACTGCTACAGAAGCTCCTCCTGGCCACATCCTCCCCAACAGCAAGCTCTGA
CGCTCTGAAGGACGGGGCCACCTGGTCCCAGACCAGCCTCAGTTCCAGAAGTCAGCGGCCTTGTGTCAAG
GTGGATGGCACCCAGGATAAGAAGACCCCCACACTGCGGGCTCAGAGCCGGCCTTGTACGGAACTGCATA
AGCACCTCACTTCGGTGCTGCCCTGTCCCAGAGTGAAAGCCTGCTCCCCAACTCCGCACCCGAGCCCTCG
GCTCCTCTCCAAAGAGGAGGAGGAGGAGGTGGGGGAGGATTGCCCAAGCCCTTGGCCGACTCCAGCCTCG
CCCCAAGACTCCCTAGCACAGGACACGGCCAGCCCCGACAGTGCCCAGCCTCCCGAGGAGGATGTGAGGG
CCATGGTACAGCTCATTCGCTACATGCATACCTACTGCCTGCCTCAGAGGAAGCTGCCCCAACGGGCCCC
AGAGCCAATCCCCCAGGCCTGCAGCAGCCTCTCCAGGCAGGTTCAACCCCGATCCCGGCATCCCCCCAAA
GCCTTCTGGACTGAGTTCTCTATCCTAAGGGAACTTCTGGCCCAAGATATCCTCTGTGATGTTAGCAAGC
CCTACCGCCTGGCCATACCTGTCTATGCTTCCCTCACACCTCAGTCCAGGCCCAGGCCCCCCAAGGACAG
TCAGGCCTCCCCTGCCCACTCTGCCATGGCAGAAGAGGTGAGAATCACTGCTTCCCCCAAGAGCACCGGG
CCTAGACCCAGCCTGCGTCCTCTGAGGCTGGAGGTGAAACGGGATGTTAACAAGCCTACAAGGCAAAAGC
GGGAGGAAGATGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAAGAAAAAGAAGAGGAAGAAGAGGA
GTGGGGCAGGAAGAGACCAGGTCGTGGCCTGCCATGGACCAAACTAGGGAGGAAGATGGACAGCTCCGTG
TGCCCCGTGCGGCGCTCCAGGAGACTGAATCCAGAGCTGGGTCCCTGGCTGACATTCACTGATGAGCCCT
TAGGTGCTCTGCCCTCGATGTGCCTGGATACAGAGACCCACAACCTGGAGGAAGACCTGGGCAGCCTCAC
AGACAGTAGTCAAGGCCGGCAGCTCCCCCAGGGATCCCAGATCCCCGCCCTGGAAAGCCCCTGTGAGAGT
GGGTGCGGAGACACAGATGAAGATCCAAGCTGCCCACAGCCCACTTCCAGAGACTCCTCCAGGTGCCTCA
TGCTGGCCTTGTCACAAAGCGACTCTCTTGGCAAGAAGAGCTTTGAGGAGTCCCTGACGGTGGAGCTTTG
CGGCACGGCAGGACTCACGCCACCCACCACACCTCCATACAAGCCAATGGAGGAGGACCCCTTCAAGCCA
GACACCAAGCTCAGCCCAGGCCAAGACACAGCTCCCAGCCTTCCCTCCCCCGAGGCTCTTCCGCTCACAG
CCACCCCAGGAGCTTCCCACAAGCTGCCCAAGAGGCACCCAGAGCGAAGCGAGCTCCTGTCCCATTTGCA
GCATGCCACAACCCAACCAGTCTCACAGGCTGGCCAGAAGCGCCCCTTCTCCTGCTCCTTTGGAGACCAC
GACTACTGCCAGGTGCTCAGGCCAGAGGCTGCCCTGCAGAGGAAGGTGCTGCGGTCCTGGGAGCCAATCG
GGGTCCACCTTGAAGACTTGGCCCAGCAGGGTGCCCCTCTGCCAACGGAAACAAAGGCCCCTAGGAGGGA
GGCAAACCAGAACTGTGACCCTACCCACAAGGACAGCATGCAGCTAAGAGACCATGAGATCCGTGCCAGT
CTCACAAAGCACTTTGGGCTGCTGGAGACTGCTCTGGAAGGTGAAGACCTGGCGTCCTGTAAAAGCCCGG
AGTATGACACCGTATTTGAGGACAGCAGCAGCAGCAGTGGCGAGAGTAGCTTCCTGCTTGAGGAGGAGGA
GGAAGAGGAGGAGGGAGGGGAAGAGGACGATGAAGGAGAGGACTCAGGGGTCAGCCCTCCCTGCTCTGAT
CACTGCCCCTACCAGAGCCCACCCAGTAAGGCCAGTCGGCAGCTCTGCTCCCGAAGCCGCTCCAGTTCCG
GCTCCTCGTCCTGCAGCTCCTGGTCACCAGCCACCCGGAAGAACTTCAGACGTGAGAGCAGAGGGCCCTG
TTCAGATGGAACCCCAAGCGTCCGGCATGCCAGGAAGCGGCGGGAAAAGGCCATCGGTGAAGGCCGTGTG
GTATACATTCGAAATCTCTCCAGTGACATGAGCTCTCGGGAACTAAAGAAGCGCTTTGAGGTGTTCGGTG
AGATTGTAGAGTGCCAGGTGCTGACGAGAAGTAAAAGAGGCCAGAAGCACGGTTTTATCACCTTCCGGTG
TTCAGAGCACGCTGCCCTGTCCGTGAGGAACGGCGCCACCCTGAGAAAGCGCAATGAGCCCTCCTTCCAC
CTGAGCTATGGAGGGCTCCGGCACTTCCGTTGGCCCAGATACACTGACTATGATCCCACATCTGAGGAGT
CCCTTCCCTCATCTGGGAAAAGCAAGTACGAAGCCATGGATTTTGACAGCTTACTGAAAGAGGCCCAGCA
GAGCCTGCATTGA

Translation (1030 aa):
MKSSRPSSSTISLTRRSAEGLEEVDHEALDRDGCGRRRLADMGGDSGEEQLCADLPELDLSQLDASDFDS
ATCFGELQWCPETSETEPSQYSPDDSELFQIDSENEALLAALTKTLDDIPEDDVGLAAFPELDEGDTPSC
TPASPAPLSAPPSPTLERLLSPASDVDELSLLQKLLLATSSPTASSDALKDGATWSQTSLSSRSQRPCVK
VDGTQDKKTPTLRAQSRPCTELHKHLTSVLPCPRVKACSPTPHPSPRLLSKEEEEEVGEDCPSPWPTPAS
PQDSLAQDTASPDSAQPPEEDVRAMVQLIRYMHTYCLPQRKLPQRAPEPIPQACSSLSRQVQPRSRHPPK
AFWTEFSILRELLAQDILCDVSKPYRLAIPVYASLTPQSRPRPPKDSQASPAHSAMAEEVRITASPKSTG
PRPSLRPLRLEVKRDVNKPTRQKREEDEEEEEEEEEEEEEKEEEEEEWGRKRPGRGLPWTKLGRKMDSSV
CPVRRSRRLNPELGPWLTFTDEPLGALPSMCLDTETHNLEEDLGSLTDSSQGRQLPQGSQIPALESPCES
GCGDTDEDPSCPQPTSRDSSRCLMLALSQSDSLGKKSFEESLTVELCGTAGLTPPTTPPYKPMEEDPFKP
DTKLSPGQDTAPSLPSPEALPLTATPGASHKLPKRHPERSELLSHLQHATTQPVSQAGQKRPFSCSFGDH
DYCQVLRPEAALQRKVLRSWEPIGVHLEDLAQQGAPLPTETKAPRREANQNCDPTHKDSMQLRDHEIRAS
LTKHFGLLETALEGEDLASCKSPEYDTVFEDSSSSSGESSFLLEEEEEEEEGGEEDDEGEDSGVSPPCSD
HCPYQSPPSKASRQLCSRSRSSSGSSSCSSWSPATRKNFRRESRGPCSDGTPSVRHARKRREKAIGEGRV
VYIRNLSSDMSSRELKKRFEVFGEIVECQVLTRSKRGQKHGFITFRCSEHAALSVRNGATLRKRNEPSFH
LSYGGLRHFRWPRYTDYDPTSEESLPSSGKSKYEAMDFDSLLKEAQQSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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