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Report for CCDS89235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89235.1 Public Mus musculus 18 Ap3s1 23 108 98 CCDS HistoryNCBI Gene:11777Re-query CCDS DB by CCDS ID:89235.1Re-query CCDS DB by GeneID:11777See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224622.1 ENSMUSP00000153388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224622.1Link to Ensembl Protein Viewer:ENSMUSP00000153388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224622Re-query CCDS DB by Protein ID:ENSMUSP00000153388
Original member Current member EBI ENSMUST00000226108.1 ENSMUSP00000153510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226108.1Link to Ensembl Protein Viewer:ENSMUSP00000153510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226108Re-query CCDS DB by Protein ID:ENSMUSP00000153510
Original member Current member EBI ENSMUST00000225520.1 ENSMUSP00000153557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225520.1Link to Ensembl Protein Viewer:ENSMUSP00000153557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225520Re-query CCDS DB by Protein ID:ENSMUSP00000153557
Original member Current member NCBI NM_001303015.1 NP_001289944.1 Accepted alive Link to Nucleotide Sequence:NM_001303015.1Link to Protein Sequence:NP_001289944.1Re-query CCDS DB by Nucleotide ID:NM_001303015Re-query CCDS DB by Protein ID:NP_001289944Link to BLAST:NP_001289944.1

Chromosomal Locations for CCDS 89235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46742013 46742081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46754371 46754462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46758003 46758114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46779188 46779259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46780661 46780768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46783759 46783794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGATCAAGGCCATCCTCATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTATA
GTGAAGACACGCAACAGCAAATCATCAGGGAGACTTTCCATTTGGTGTCTAAGCGCGATGAGAACGTTTG
TAATTTCCTAGAAGGAGGATTATTAATTGGAGGCTCTGACAACAAGCTCATTTACAGACATTATGCAACA
CTATATTTTGTCTTCTGTGTGGACTCCTCAGAAAGTGAACTTGGCATTTTAGATCTAATTCAAGTATTTG
TGGAAACATTAGACAAATGTTTTGAAAATGTTTGTGAACTGGATTTAATATTCCATGTAGACAAGGTTCA
TAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACCAACATGAATGAGATTGTCACACAA
ATTGATGCACAAAATAAACTGGAGAAATCTGAGACCTTTATCTTTCAGTCTCCCAGACAGGACAGGTAG

Translation (162 aa):
MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYAT
LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQ
IDAQNKLEKSETFIFQSPRQDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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