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Report for CCDS89186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89186.1 Public Mus musculus 18 Rab18 23 108 98 CCDS HistoryNCBI Gene:19330Re-query CCDS DB by CCDS ID:89186.1Re-query CCDS DB by GeneID:19330See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234626.1 ENSMUSP00000157198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234626.1Link to Ensembl Protein Viewer:ENSMUSP00000157198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234626Re-query CCDS DB by Protein ID:ENSMUSP00000157198
Original member Current member NCBI NM_001278447.1 NP_001265376.1 Accepted alive Link to Nucleotide Sequence:NM_001278447.1Link to Protein Sequence:NP_001265376.1Re-query CCDS DB by Nucleotide ID:NM_001278447Re-query CCDS DB by Protein ID:NP_001265376Link to BLAST:NP_001265376.1

Chromosomal Locations for CCDS 89186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6765265 6765332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6770054 6770109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6778477 6778556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6783120 6783192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6784570 6784688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6784939 6785005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6788480 6788655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGACGAGGACGTGCTGACCACTCTGAAGATACTCATCATCGGCGAGAGTGGGGTGGGCAAGTCCAGCC
TGCTCCTGAGGTTCACAGATGATACCTTTGATCCAGAACTTGCAGCAACAATAGAATTTTCATTTCTTCA
AGGTGTTGACTTTAAGGTGAAAACGATTTCAGTGGATGGAAATAAGGCTAAACTTGCAATATGGGATACA
GCTGGTCAAGAGAGGTTCAGAACATTAACTCCCAGCTATTATAGAGGTGCACAGGGAGTTATATTAGTCT
ATGATGTCACAAGAAGAGACACCTTTGTTAAACTGGATAACTGGTTAAATGAATTGGAAACATACTGTAC
AAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATTGATAAGGAAAACCGTGAAGTCGATAGAAAT
GAAGGCTTGAAATTTGCACGCAAGCATTCTATGTTGTTCATAGAGGCAAGTGCAAAAACCTGTGATGGTG
TACAGTGTGCCTTTGAGGAGCTTGTTGAGAAGATCATTCAGACACCTGGCCTGTGGGAAAGTGAGAACCA
GAACAAAGGAGTCAAGCTGTCACACAGGGAAGAGAGCCGCGGAGGAGGCGCCTGCGGCGGTTACTGCTCT
GTGCTATAA

Translation (212 aa):
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIEFSFLQGVDFKVKTISVDGNKAKLAIWDT
AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRN
EGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKLSHREESRGGGACGGYCS
VL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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