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Report for CCDS88954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88954.1 Public Mus musculus 16 Chodl 23 108 98 CCDS HistoryNCBI Gene:246048Re-query CCDS DB by CCDS ID:88954.1Re-query CCDS DB by GeneID:246048See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232415.1 ENSMUSP00000156041.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232415.1Link to Ensembl Protein Viewer:ENSMUSP00000156041.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232415Re-query CCDS DB by Protein ID:ENSMUSP00000156041
Original member Current member NCBI NM_001362555.1 NP_001349484.1 Accepted alive Link to Nucleotide Sequence:NM_001362555.1Link to Protein Sequence:NP_001349484.1Re-query CCDS DB by Nucleotide ID:NM_001362555Re-query CCDS DB by Protein ID:NP_001349484Link to BLAST:NP_001349484.1

Chromosomal Locations for CCDS 88954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 78931369 78931447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78941225 78941534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78941647 78941804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78944586 78944657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78946661 78946763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78950357 78950441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGATCCGCATCGCCTCACTCTTGCTGGGAGCTGCGCTGCTCTGTGCCCAGGGAGCCTTTGCCCGAAGGG
TGGTCAGTGGTCAAAAGGTGTGTTTTGCTGATGTGAAACATCCCTGCTACAAAATGGCGTACTTCCATGA
ACTGTCTAGCCGGGTGAGCTTCCAGGAAGCAAGGCTGGCTTGTGAAAGTGAAGGGGGTGTCCTCCTGAGT
CTTGAGAATGAAGCTGAACAGAAGTTAATAGAGAGCATGCTTCAGAACCTGACAAAACCCGGAACAGGTA
TTTCAGATGGTGACTTCTGGATAGGACTTTTGAGAAGCGGAGATGGCCAAACATCGGGTGCCTGCCCAGA
TCTCTACCAGTGGTCTGATGGAAGCAGCTCCCAGTTCCGAAACTGGTACACTGATGAACCTTCTTGTGGG
AGTGAAAAATGTGTAGTCATGTACCACCAACCAACTGCCAATCCTGGCCTAGGAGGTCCCTACCTTTACC
AGTGGAATGACGACAGGTGCAACATGAAGCACAATTACATCTGCAAGTATGAACCAGAGCCCGCTGAAAA
GCCGTATCTTACAAACCAACCTGAAGAGACCCATGAAAATGTGGTTGTTACTGAAGCAGGCATAATTCCC
AATCTAATCTATGTTATTATACCAACGATTCCGCTGCTCTTACTGATACTGGTTGCTTTGGGAACCTGCT
GTTTCCAGATGTTGCATAAAAGTAAAGGAAGATCAAAAACTAGCCCGAATCAGTCTACACTGTGGATTTC
AAAAAGCACGAGGAAGGAAAGTGGCATGGAGGTATAA

Translation (268 aa):
MIRIASLLLGAALLCAQGAFARRVVSGQKVCFADVKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLS
LENEAEQKLIESMLQNLTKPGTGISDGDFWIGLLRSGDGQTSGACPDLYQWSDGSSSQFRNWYTDEPSCG
SEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEPAEKPYLTNQPEETHENVVVTEAGIIP
NLIYVIIPTIPLLLLILVALGTCCFQMLHKSKGRSKTSPNQSTLWISKSTRKESGMEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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