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Report for CCDS88892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88892.1 Public Mus musculus 16 Med15 23 108 98 CCDS HistoryNCBI Gene:94112Re-query CCDS DB by CCDS ID:88892.1Re-query CCDS DB by GeneID:94112See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232236.1 ENSMUSP00000156291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232236.1Link to Ensembl Protein Viewer:ENSMUSP00000156291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232236Re-query CCDS DB by Protein ID:ENSMUSP00000156291
Original member Current member NCBI NM_001285884.1 NP_001272813.1 Accepted alive Link to Nucleotide Sequence:NM_001285884.1Link to Protein Sequence:NP_001272813.1Re-query CCDS DB by Nucleotide ID:NM_001285884Re-query CCDS DB by Protein ID:NP_001272813Link to BLAST:NP_001272813.1

Chromosomal Locations for CCDS 88892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17652200 17652263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17652705 17652807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653191 17653357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653445 17653605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17653925 17653991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655014 17655077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655147 17655281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655444 17655571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17655678 17655805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17663377 17663496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17671545 17671673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17673069 17673398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17674405 17674658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17680549 17680761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17683159 17683188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17685453 17685504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17697607 17697694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17722756 17722823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGGACGTTTCGGGGCAGGAGACCGACTGGCGTAGCGCCGCCTTTCGGCAGAAGCTGGTCAGCCAAATTG
AGGATGCCATGAGGAAAGCTGGTGTGGCCCACAGTAAATCTAGCAAGGATATGGAGAGTCATGTGTTCCT
GAAGGCCAAGACCCGGGATGAGTATCTTTCCCTTGTGGCCCGACTCATTATCCATTTCCGAGATATTCAT
AACAAGAAATCCCAAGCTTCTGTCAGTGACCCCATGAATGCACTGCAGAGCCTTACTGGTGGACCCACCC
CAGGAGCAGCTGGGATTGGCATGCCTCCTCGGGGCCCAGGACAGTCCCTGGGTGGGATGGGTGGCCTTGG
CGCTATGGGACAACCACTGCCCCTCTCCGGGCAACCACCCCCTGGAACCTCTGGAATGGCCCCTCATGGC
ATGGCTGTGGTGTCTACAGCAACTCCACAGACTCAGCTGCAGCTCCAGCAAGTGGCATTGCAGCAACAGC
AGCAGCAGCAACAACAACAGCAATTCCAGCAACAGCAGGCAGCACTGCAGCAACAGCAGCAACAGCAGCA
GCAGCAACAGCAGCAACAGCAGTTCCAGGCACAACAGAATGCCATGCAGCAACAGTTCCAAGCAGTAGTG
CAGCAGCAGCAGCTTCAGCAGCAGCAGCAGCAGCAGCACCTGATTAAGTTGCATCATCAAAGCCAGCAAC
AACAGATACAACAGCAGCAACTGCAGAGGATGGCACAGTTGCAGCTGCAGCAACAGCAACAGCAGCAACA
GCAGCAGGCTTTGCAGGCCCAGCCACCAATGCAGCAGCCATCAATGCAGCAGCCACAGCCTCCCCCTTCT
CAGGCCCTACCCCAGCAGCTGTCACAGCTGCATCATCCACAGCATCACCAGCCACCACCTCAGGCTCAGC
AGTCCCCCATTGCTCAAAACCAACCACCACAGATCCCACCACAGTCACAGAGCCAGCCTTTGGTGTCACA
AGCACAAGCCCTTCCTGGACCGATGCTGTATGCTGCCCAACAGCAGCTGAAATTTGTCCGTGCTCCGATG
GTGGTCCAGCAGCCGCAAGTGCAGCCCCAGGTGCAGCAGGTGCAGCCCCAGGTGCAGCCGCAGGCAGCAG
TGCAGGCAGCACAGTCTGCCCAGATGGTAGCTCCCGGCGTCCAGATGATTGCTGAAGCCTTGGCCCAAGG
CGGGATGCACGTAAGAGCCCGGTTCCCGCCCACCTCCACCATGTCTGCTGGCCCGTCAAGCTCCATCTCT
TTGGGCGGACAGCCCACAACACAGGTCAGCCAAAGCAGCCTCACCATGCTGTCCTCACCGTCACCAGGCC
AGCAGGTGCAGACCCCACAGTCGATGCCACCTCCCCCACAGCCGTCCCCACAACCTGGCTCACAGCCCAA
CTCTAATGTCAGCTCCGGCCCTGCCCCATCTCCCAGCAGCTTCCTGCCTAGCCCTTCACCACAGCCTTCT
CAGAGCCCAGTGACAGCACGCACCCCACAGAACTTCAGCGTTCCTTCCCCTGGACCTTTAAACACCCCTG
TGAACCCCAGCTCTGTCATGAGCCCAGCTGGCTCTAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCT
GAAGCAATTGTCCAAGTACATCGAGCCCCTGCGACGCATGATCAACAAGATCGACAAGAATGAAGACAGA
AAAAAGGACTTAAGTAAGATGAAGAGCCTGCTGGACATCCTCACCGACCCCTCGAAGAGGTGTCCCCTGA
AGACCCTGCAAAAGTGTGAGATTGCGCTGGAGAAGCTCAAGAATGACATGGCAGTGCCCACACCCCCACC
ACCCCCAGTTCTTCCAACCAAACAGCAGGACCTGTGCCAACCACTCCTAGATGCAGTCCTGGCCAACATC
CGTTCACCTGTCTTCAACCATTCCCTGTACCGCACATTTGTGCCAGCCATGATGGCCATCCATGGCCCAC
CTATCGTGTCGCCAGTGGTGTGTTCCCGGAAGCGCCGGTTTGAGGAGGATGAGCGGCAGAGCATACCCAA
TGTGCTGCAAGGTGAAGTGGCAAGGCTGGATCCCAAGTTCCTGGTGAACTTGGACCCTTCTCACTGCAGC
AACAACGGTACTGTCCACCTGATCTGCAAGCTGGATGATAAGGACCTCCCTAGTGTGCCACCACTGGAGC
TCAGTGTGCCTGCTGACTACCCTGCCCAGAGCCCAATGTGGATCGACCGTCAGTGGCAATATGGTAGATG
CCAACCCCTTTCTGCAGTCAGTGCACCGGTGCATGACCTCAAGGCTGCTGCAGCTCCCTGA

Translation (766 aa):
MDVSGQETDWRSAAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIH
NKKSQASVSDPMNALQSLTGGPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPLPLSGQPPPGTSGMAPHG
MAVVSTATPQTQLQLQQVALQQQQQQQQQQQFQQQQAALQQQQQQQQQQQQQQQFQAQQNAMQQQFQAVV
QQQQLQQQQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQQQQQQALQAQPPMQQPSMQQPQPPPS
QALPQQLSQLHHPQHHQPPPQAQQSPIAQNQPPQIPPQSQSQPLVSQAQALPGPMLYAAQQQLKFVRAPM
VVQQPQVQPQVQQVQPQVQPQAAVQAAQSAQMVAPGVQMIAEALAQGGMHVRARFPPTSTMSAGPSSSIS
LGGQPTTQVSQSSLTMLSSPSPGQQVQTPQSMPPPPQPSPQPGSQPNSNVSSGPAPSPSSFLPSPSPQPS
QSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDR
KKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLDAVLANI
RSPVFNHSLYRTFVPAMMAIHGPPIVSPVVCSRKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCS
NNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWIDRQWQYGRCQPLSAVSAPVHDLKAAAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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