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Report for CCDS88814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88814.1 Public Mus musculus 15 Septin3 23 108 98 CCDS HistoryNCBI Gene:24050Re-query CCDS DB by CCDS ID:88814.1Re-query CCDS DB by GeneID:24050See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230365.1 ENSMUSP00000155480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230365.1Link to Ensembl Protein Viewer:ENSMUSP00000155480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230365Re-query CCDS DB by Protein ID:ENSMUSP00000155480
Original member Current member NCBI NM_001368645.1 NP_001355574.1 Accepted alive Link to Nucleotide Sequence:NM_001368645.1Link to Protein Sequence:NP_001355574.1Re-query CCDS DB by Nucleotide ID:NM_001368645Re-query CCDS DB by Protein ID:NP_001355574Link to BLAST:NP_001355574.1

Chromosomal Locations for CCDS 88814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82279444 82279606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283059 82283187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283677 82283758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82284372 82284509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82285787 82285904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82286437 82286532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82289195 82289294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290404 82290455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290738 82290831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82291253 82291306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGTCTGAGCTGGTACCTGAGCCCAGGCCTAAGCCGGCGGTGCCCATGAAGCCGGTCAGCATCAACTCCA
ACCTGCTAGGCTACATTGGCATTGACACCATTATCGAGCAGATGCGCAAGAAGACCATGAAGACTGGCTT
TGACTTCAACATCATGGTCGTTGGCCAGAGTGGACTGGGCAAGTCAACACTGGTCAACACCCTCTTCAAG
TCCCAAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAG
CGATTGGGCATGTGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAGTCATCGACACACCAGGCTTTGG
AGACCAGATCAACAATGAAAACTGCTGGGAGCCCATTGAGAAATACATCAACGAACAGTACGAAAAGTTC
CTGAAGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCCCTGACACCCGTGTCCACTGCTGCCTCTACT
TCATCTCCCCGACAGGACACTCCTTACGACCACTGGATCTTGAGTTCATGAAACATCTCAGCAAAGTGGT
GAACATCATTCCTGTCATTGCCAAGGCTGATACCATGACCCTGGAGGAGAAGTCGGAATTCAAGCAGAGG
GTTCGCAAAGAACTTGAAGTAAACGGCATTGAATTCTACCCTCAGAAGGAATTTGATGAGGATTTGGAGG
ACAAGACAGAGAATGACAAAATCCGGCAGGAGAGCATGCCCTTCGCCGTGGTGGGGAGTGACAAGGAGTA
CCAAGTGAACGGCAAGAGGGTCCTCGGGAGGAAAACACCCTGGGGGATCATCGAAGTGGAAAACCTCAAC
CACTGTGAGTTTGCCCTGCTCCGAGACTTCGTCATCAGGACTCACCTCCAGGACCTCAAAGAAGTAACAC
ACAACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGAACAAAAA
GCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAA

Translation (341 aa):
MSELVPEPRPKPAVPMKPVSINSNLLGYIGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLVNTLFK
SQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKF
LKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQR
VRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLN
HCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRLNDNGGLPPNKKLCASLKRSGEGFNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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