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Report for CCDS88564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88564.1 Public Mus musculus 14 Htd2 23 108 98 CCDS HistoryNCBI Gene:109729085Re-query CCDS DB by CCDS ID:88564.1Re-query CCDS DB by GeneID:109729085See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180369.1 ENSMUSP00000136494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180369.1Link to Ensembl Protein Viewer:ENSMUSP00000136494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180369Re-query CCDS DB by Protein ID:ENSMUSP00000136494
Original member NCBI NM_001348727.1 NP_001335656.1 Updated not alive Link to Nucleotide Sequence:NM_001348727.1Link to Protein Sequence:NP_001335656.1Re-query CCDS DB by Nucleotide ID:NM_001348727Re-query CCDS DB by Protein ID:NP_001335656
Current member NCBI NM_001348727.2 NP_001335656.1 Accepted alive Link to Nucleotide Sequence:NM_001348727.2Link to Protein Sequence:NP_001335656.1Re-query CCDS DB by Nucleotide ID:NM_001348727Re-query CCDS DB by Protein ID:NP_001335656Link to BLAST:NP_001335656.1

Chromosomal Locations for CCDS 88564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8090078 8090554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTGGCGTGGGCTTCAGAGGAGACTGTGGCAACATCATGTGGTACCAACAGGGCAGTGTTTTCAGTATG
TGCACACGAAAGTTGGAGACCGAGCGGAGCTCAGCAGAGCCTTCACACAGCAGGATGTAGCTACCTTCTC
AGAGTTAACGGGAGATGCCAATCCTTTGCATTTAAGTGAAGATTTTGCAAAACACTCCAAGTTTGGAAAG
ACAATTGTTCACGGAGTTTTGATAAATGGACTTATTTCAGCTCTCCTGGGCACCAAAATGCCAGGGCCAG
GCTGTGTGTTTCTTTCCCAGGAAATTAAATTTCCTGCTCCTCTATATGTTGGAGAGGTGGTCTTAGCATC
TGCAGAAGTGAAAAGGCTGAAGCAGTCTGTTGCTGTTGTTGCAGTGTCCTGTTGTGTAATAGAAAGTAAG
AAGACAGTTATGGAAGGCTGGGTTAAAGTTATGGTCCCGGAAGCTCCTAGATCCTGA

Translation (158 aa):
MWRGLQRRLWQHHVVPTGQCFQYVHTKVGDRAELSRAFTQQDVATFSELTGDANPLHLSEDFAKHSKFGK
TIVHGVLINGLISALLGTKMPGPGCVFLSQEIKFPAPLYVGEVVLASAEVKRLKQSVAVVAVSCCVIESK
KTVMEGWVKVMVPEAPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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