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Report for CCDS88487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88487.1 Public Mus musculus 13 Cast 23 108 98 CCDS HistoryNCBI Gene:12380Re-query CCDS DB by CCDS ID:88487.1Re-query CCDS DB by GeneID:12380See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223309.1 ENSMUSP00000152657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223309.1Link to Ensembl Protein Viewer:ENSMUSP00000152657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223309Re-query CCDS DB by Protein ID:ENSMUSP00000152657
Original member Current member NCBI NM_001301160.1 NP_001288089.1 Accepted alive Link to Nucleotide Sequence:NM_001301160.1Link to Protein Sequence:NP_001288089.1Re-query CCDS DB by Nucleotide ID:NM_001301160Re-query CCDS DB by Protein ID:NP_001288089Link to BLAST:NP_001288089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288089.1 431 P51125-5 431 100% 0 0

Chromosomal Locations for CCDS 88487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74695899 74695952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74699105 74699173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74700624 74700716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74701216 74701251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74702558 74702650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74704101 74704205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74713646 74713744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74720932 74721003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74721177 74721227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74724778 74724861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74725364 74725465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74727275 74727370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74728340 74728429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74731079 74731126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74732094 74732177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74734058 74734177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGCCAGTTTCTGTCTTCTACTTTCTGGGAGGGCTCACCTGCTGCAGTGTGGCAAGAAAAGCTTCGTG
AGGGTGAACGAAAGGGAGCTGGAGAAACCATCCCTATCCTCCAGGACCATGCAAAAGCAAAAGAAGAAAG
GCAGGAGAAGTGTGGTGAAGATGAGGACACAGTCCCAGCTGAGTACAGGTTAAAACCAGCAAAGGATAAA
GATGGAAAACCACTATTGCCAGAGCCTGAAGAAACATCTAAGAGCCTGAGTGAGTCGGAGCTGATTGGGG
AGCTTTCAGCAGATTTTGACCGATCTACATATCAAGACAAACCATCTACGCCAGCTGAAAAGAAATCCAA
TGACACATCCCAAACTCCTCCGGGGGAGACTGTGCCTCGGGCCTCCATGTGCAGTATACGGTCAGCGCCA
CCCAAACTAGCATCCTTGAAGGGCGTGGTACCAGAAGATGCTGTTGAAACCTTGGCTGGAAGCCTGGGGA
CAAGGGAAGCAGATCCAGAACATGAAAAAACTGTGGAGGATAAAGTCAAGGAGAAAGCTAAAGAAGAAGA
GCATGAAAAACTTGGTGAAAAAGAAGAAACAGTGCCTCCTGATTATCGACTAGAAGAAGTCAAGGATAAG
GATGGAAAACCACTCCTGCCCAAAGAATCCCAGGAACAACTTGCACCCTTAAGCGATGACTTCCTTCTTG
ATGCCTTGTCTCAGGACTTCTCCAGTCCGGCAAACATATCGTCTCTTGAATTTGAAGATGCCAAACTTTC
TGCTGCCATTTCTGAAGTAGTTTCTCAGACACCTGCTCCAAGCACCCATGCAGCAGCTCCACTGCCTGGC
ACTGAGCAGAAAGACAAAGAACTTGATGATGCCTTGGATGAACTTTCTGACAGTCTTGGACAAAGGCCGC
CTGATCCAGATGAGAACAAACCACTGGATGACAAAGTGAAGGAGAAAATCAAACCAGAGCATAGCGAGAA
ACTGGGAGAAAGAGACGACACCATCCCCCCTGAATACAGGCATCTCTTGGATAATGATGGGAAGGACAAA
CCAGAGAAGCCACCGACTAAGAAAACAGAGAAACCTGATCAGGACCGGGACCCCATTGATGCCCTCTCAG
AAGATTTGGATAGCTGCCCCTCAACTACAGAGACCTCAAAGAATACAGCAAAGGGGAAGAGCAAGAAGAC
TTCAAGTTCCAAAGCATCCAAGGACGGAGAGAAAACAAAGGACTCTTCCAAGAAGACAGAGGAAGTGTCC
AAGCCAAAGGCTAAAGAAGATGCAAGACACAGTTAA

Translation (431 aa):
MGQFLSSTFWEGSPAAVWQEKLREGERKGAGETIPILQDHAKAKEERQEKCGEDEDTVPAEYRLKPAKDK
DGKPLLPEPEETSKSLSESELIGELSADFDRSTYQDKPSTPAEKKSNDTSQTPPGETVPRASMCSIRSAP
PKLASLKGVVPEDAVETLAGSLGTREADPEHEKTVEDKVKEKAKEEEHEKLGEKEETVPPDYRLEEVKDK
DGKPLLPKESQEQLAPLSDDFLLDALSQDFSSPANISSLEFEDAKLSAAISEVVSQTPAPSTHAAAPLPG
TEQKDKELDDALDELSDSLGQRPPDPDENKPLDDKVKEKIKPEHSEKLGERDDTIPPEYRHLLDNDGKDK
PEKPPTKKTEKPDQDRDPIDALSEDLDSCPSTTETSKNTAKGKSKKTSSSKASKDGEKTKDSSKKTEEVS
KPKAKEDARHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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