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Report for CCDS88437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88437.1 Public Mus musculus 13 Nqo2 23 108 98 CCDS HistoryNCBI Gene:18105Re-query CCDS DB by CCDS ID:88437.1Re-query CCDS DB by GeneID:18105See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88437.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220844.1 ENSMUSP00000152068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220844.1Link to Ensembl Protein Viewer:ENSMUSP00000152068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220844Re-query CCDS DB by Protein ID:ENSMUSP00000152068
Original member Current member NCBI NM_001163239.1 NP_001156711.1 Accepted alive Link to Nucleotide Sequence:NM_001163239.1Link to Protein Sequence:NP_001156711.1Re-query CCDS DB by Nucleotide ID:NM_001163239Re-query CCDS DB by Protein ID:NP_001156711Link to BLAST:NP_001156711.1

Chromosomal Locations for CCDS 88437.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33972437 33972476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33979532 33979662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33981425 33981538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33982448 33982549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33985316 33985492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGAACTTTGAGCCAAGGGCCACAAGAAATGATATCACTGGTGCCCCCTCTAATCCTGACGTCTTCAGTT
ATGGGATAGAAACCCATGAAGCCTACAAGAAGAAAGCTCTGACCAGTGATATATTTGAAGAACAGAGAAA
GGTGCAAGAAGCTGATCTTGTGATATTTCAGTTTCCACTATACTGGTTCAGCGTTCCAGCAATCCTAAAA
GGTTGGATGGATAGGGTGCTGTGCCGAGGGTTTGCCTTTGATATCCCAGGCTTTTATGACTCTGGTTTTC
TCAAGGGTAAATTAGCTCTCCTTTCCTTAACCACGGGAGGTACAGCGGAGATGTACACAAAAGATGGGGT
CAGTGGAGATTTCCGGTACTTCCTGTGGCCACTTCAGCATGGTACACTGCACTTCTGTGGATTTAAAGTC
CTTGCCCCCCAGATCAGTTTTGGTCTTGATGTTTCATCAGAAGAAGAAAGGAAAGTGATGCTGGCATCAT
GGGCCCAGCGGCTGAAGAGCATCTGGAAGGAAGAACCCATCCACTGCACACCCCCTTGGTACTTCCAAGA
GTAA

Translation (187 aa):
MNFEPRATRNDITGAPSNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILK
GWMDRVLCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFCGFKV
LAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYFQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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