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Report for CCDS88386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88386.1 Public Mus musculus 12 Kcnk10 23 108 98 CCDS HistoryNCBI Gene:72258Re-query CCDS DB by CCDS ID:88386.1Re-query CCDS DB by GeneID:72258See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110113.2 ENSMUSP00000105740.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110113.2Link to Ensembl Protein Viewer:ENSMUSP00000105740.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110113Re-query CCDS DB by Protein ID:ENSMUSP00000105740
Original member Current member NCBI NM_001316664.1 NP_001303593.1 Accepted alive Link to Nucleotide Sequence:NM_001316664.1Link to Protein Sequence:NP_001303593.1Re-query CCDS DB by Nucleotide ID:NM_001316664Re-query CCDS DB by Protein ID:NP_001303593Link to BLAST:NP_001303593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303593.1 521 Q8BUW1-2 521 100% 0 0

Chromosomal Locations for CCDS 88386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98434807 98435427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98436192 98436334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98440592 98440778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98489905 98490065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98496193 98496310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98518498 98518832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98575041 98575041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCCGTGCCTGCAGCAGCCCCACCAGTGTGCCAGCCCAAGAGTGCCACTAACGGGCATCACCCTGTTC
CTCGACTCTCCATTTCCTCTCGAGCCACGGTGGTAGCCAGGATGGAAGGCGCCTCCCAGGGAGGCCTGCA
AACAGTTATGAAGTGGAAAACAGTGGTTGCCATCTTCGTGGTGGTCGTGGTCTACCTCGTCACTGGTGGC
CTTGTCTTCCGGGCCTTGGAACAGCCCTTCGAGAGCAGTCAGAAGAACACAATCGCCTTGGAGAAGGCAG
AATTCTTGAGAGATCACATCTGTGTGAGTCCCCAGGAACTAGAGACACTGATTCAGCATGCACTCGATGC
TGATAACGCGGGAGTCAGCCCAGTAGGAAACTCTTCCAACAGCAGCAGTCACTGGGACCTTGGAAGTGCC
TTCTTCTTTGCTGGGACAGTCATCACAACCATAGGGTATGGGAATATTGCTCCGAGCACTGAAGGAGGCA
AAATCTTTTGTATTTTATATGCCATCTTTGGGATCCCGCTTTTTGGTTTCTTATTGGCTGGAATTGGAGA
CCAACTTGGAACCATCTTTGGCAAAAGCATTGCAAGAGTGGAAAAGGTTTTTCGAAAGAAGCAAGTGAGC
CAGACCAAGATCCGGGTCATCTCCACGATTCTCTTCATCTTGGCTGGCTGCATCGTGTTTGTGACCATCC
CTGCTGTCATCTTTAAATACATCGAGGGTTGGACCGCCTTGGAGTCCATCTACTTTGTGGTAGTCACGCT
GACCACAGTAGGCTTTGGTGATTTTGTGGCAGGGGGAAATGCTGGCATCAATTACCGAGAGTGGTACAAG
CCGCTGGTGTGGTTTTGGATCCTTGTTGGCCTTGCCTACTTTGCAGCTGTCCTCAGTATGATCGGAGACT
GGCTGCGGGTTTTATCCAAAAAGACAAAAGAAGAGGTTGGTGAGATCAAAGCCCACGCAGCTGAGTGGAA
GGCTAATGTCACTGCTGAGTTCCGGGAGACGAGAAGGCGGCTCAGCGTTGAGATCCATGACAAGCTGCAA
CGGGCAGCCACTATCCGAAGTATGGAGCGCCGGAGGCTGGGCTTGGACCAGAGGGCCCACTCACTGGACA
TGCTATCCCCTGAGAAGCGTTCTGTCTTTGCAGCCCTGGACACAGGCCGTTTCAAGGCCTCATCGCAGGA
GAGTATCAACAACAGACCCAACAACCTACGCCTTAAGGGGCCAGAACAGCTTACCAAACATGGGCAGGGC
GCTTCTGAGGACAACATCATCAACAAGTTTGGGTCCACCTCCAAACTCACAAAGAGGAAAAACAAAGATC
TCAAAAAGACCTTACCCGAGGATGTTCAGAAAATCTACAAAACCTTCCGGAATTACTCTCTGGATGAAGA
GAAGAAAGAGGACGAGACAGAAAAGATGTGTAACTCCGACAACTCCAGCACAGCCATGCTGACAGAGTGT
ATACAGCAGCAAGCTGAGATGGAGAACGGAATGGTACCCACGGACACCAAAGACCAGGGGCTGGAGAACA
ATTCTTTACTTGAAGACAGAAACTAA

Translation (521 aa):
MAVPAAAPPVCQPKSATNGHHPVPRLSISSRATVVARMEGASQGGLQTVMKWKTVVAIFVVVVVYLVTGG
LVFRALEQPFESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAGVSPVGNSSNSSSHWDLGSA
FFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIFGKSIARVEKVFRKKQVS
QTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGGNAGINYREWYK
PLVWFWILVGLAYFAAVLSMIGDWLRVLSKKTKEEVGEIKAHAAEWKANVTAEFRETRRRLSVEIHDKLQ
RAATIRSMERRRLGLDQRAHSLDMLSPEKRSVFAALDTGRFKASSQESINNRPNNLRLKGPEQLTKHGQG
ASEDNIINKFGSTSKLTKRKNKDLKKTLPEDVQKIYKTFRNYSLDEEKKEDETEKMCNSDNSSTAMLTEC
IQQQAEMENGMVPTDTKDQGLENNSLLEDRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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