NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88385.1 Public Mus musculus 12 Kcnk10 23 108 98 CCDS HistoryNCBI Gene:72258Re-query CCDS DB by CCDS ID:88385.1Re-query CCDS DB by GeneID:72258See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221305.1 ENSMUSP00000152656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221305.1Link to Ensembl Protein Viewer:ENSMUSP00000152656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221305Re-query CCDS DB by Protein ID:ENSMUSP00000152656
Original member Current member NCBI NM_001316666.1 NP_001303595.1 Accepted alive Link to Nucleotide Sequence:NM_001316666.1Link to Protein Sequence:NP_001303595.1Re-query CCDS DB by Nucleotide ID:NM_001316666Re-query CCDS DB by Protein ID:NP_001303595Link to BLAST:NP_001303595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303595.1 241 Q8BUW1-3 241 99.5851% 0 1

Chromosomal Locations for CCDS 88385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98456846 98456905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98489905 98490065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98496193 98496310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98518498 98518832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98574157 98574208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAAATTTCCAATCGAGACGCCAAGAAAGCAGGTGAACTGGGATCCTAAAGTGGCCGTGCCTGCAGCAG
CCCCACCAGTGTGCCAGCCCAAGAGTGCCACTAACGGGCATCACCCTGTTCCTCGACTCTCCATTTCCTC
TCGAGCCACGGTGGTAGCCAGGATGGAAGGCGCCTCCCAGGGAGGCCTGCAAACAGTTATGAAGTGGAAA
ACAGTGGTTGCCATCTTCGTGGTGGTCGTGGTCTACCTCGTCACTGGTGGCCTTGTCTTCCGGGCCTTGG
AACAGCCCTTCGAGAGCAGTCAGAAGAACACAATCGCCTTGGAGAAGGCAGAATTCTTGAGAGATCACAT
CTGTGTGAGTCCCCAGGAACTAGAGACACTGATTCAGCATGCACTCGATGCTGATAACGCGGGAGTCAGC
CCAGTAGGAAACTCTTCCAACAGCAGCAGTCACTGGGACCTTGGAAGTGCCTTCTTCTTTGCTGGGACAG
TCATCACAACCATAGGGTATGGGAATATTGCTCCGAGCACTGAAGGAGGCAAAATCTTTTGTATTTTATA
TGCCATCTTTGGGATCCCGCTTTTTGGTTTCTTATTGGCTGGAATTGGAGACCAACTTGGAACCATCTTT
GGCAAAAGCATTGCAAGAGTGGAAAAGGTTTTTCGAGCACATGGATGTTTTGTCTGCACTCATATCTTCG
TGCCTGGTATCCACAGGAGCCATTAG

Translation (241 aa):
MKFPIETPRKQVNWDPKVAVPAAAPPVCQPKSATNGHHPVPRLSISSRATVVARMEGASQGGLQTVMKWK
TVVAIFVVVVVYLVTGGLVFRALEQPFESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAGVS
PVGNSSNSSSHWDLGSAFFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIF
GKSIARVEKVFRAHGCFVCTHIFVPGIHRSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH