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Report for CCDS88371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88371.1 Public Mus musculus 12 Ylpm1 23 108 98 CCDS HistoryNCBI Gene:56531Re-query CCDS DB by CCDS ID:88371.1Re-query CCDS DB by GeneID:56531See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168977.7 ENSMUSP00000128962.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168977.7Link to Ensembl Protein Viewer:ENSMUSP00000128962.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168977Re-query CCDS DB by Protein ID:ENSMUSP00000128962
Original member Current member NCBI NM_001347421.1 NP_001334350.1 Accepted alive Link to Nucleotide Sequence:NM_001347421.1Link to Protein Sequence:NP_001334350.1Re-query CCDS DB by Nucleotide ID:NM_001347421Re-query CCDS DB by Protein ID:NP_001334350Link to BLAST:NP_001334350.1

Chromosomal Locations for CCDS 88371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84996490 84997356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85012889 85013125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85013904 85014122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85014650 85015593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85033917 85034034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85040573 85040993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85041823 85041915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85042122 85042311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85042942 85043060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85044370 85044524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85048809 85048871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85049133 85049252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85049692 85049868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85049944 85050027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85050289 85050372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85057222 85057302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85060263 85060314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85064971 85065101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85069619 85069765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4302 nt):
ATGTATCCGAATTGGGGCCGGTATGGCGGGAGCAGCCACTATCCGCCGCCGCCGGTGCCGCCGCCGCCGC
CACCGGTGGCGCTTCCCGAGGCCTCGCCGGGGCCCGGGTACTCCAGTTCGACGGCTCCCGCGGCCCCTTC
CTCTTCAGGCTTCATGAGCTTCCGAGAGCAACACTTGGCGCAGCTCCAGCAGCTGCAGCAGATGCACCAG
AAGCAAATGCAGTGCGTGCTCCAACCCCACCATCTTCCTCCGCCCCCGCTGCCACCCCCGCCGGTGATGC
CCGGGGGCGGCTACGGAGACTGGCAGCCGCCTCCGCCACCGATGCCCCCGCCACCTGGACCAGCCCTCAG
TTATCAGAAGCAGCAGCAGTACAAACACCAGATGATCCACCACCAACGAGATGGGCCTCCGGGTTTGGTT
CCAATGGAGCTGGAGTCCCCTCCTGAATCTCCCCCTGTACCTCCAGGATCCTACATGCCCCCATCCCAGT
CGTACATGCCTCCACCTCAGCCACCACCCTCGTACTATCCCCCTTCCTCCGCTCAGCCCTACCTGCCTCC
TGCTCAGCCATCCCCTTCACAGTCTCCACCTTCCCAGTCCTATCTGGCGCCCACTCCTTCTTATTCTTCC
TCGTCCTCCTCACAATCATATTTGAGCCATTCCCAGCCCTACTTACCCCCTTCTCAGGCCTCTCCTTCCC
GCTCCTCCCAGGGCCCTTCTAAACCCCAGCTACCACCACCACCGTCCATCCCTTCTGGGAATAAAACAGC
TATCCAGCAAGAGCCTTTGGAGAGTGGGGCCAAGAACAAGACTGCTGAACAGAAGCAAGCTGCTCCTGAA
CCAGATCCCTCTACAATGACTCCACAGGAGCAACAACAATATTGGTATCGACAGCATCTACTTAGTTTGC
AGCAGAGGACAAAGGTGCATTTGCCGGGACATAAAAAGGGTCTTGTCACAGCAAAGGATGTACCAGAACC
CATCAAAGAAGAAGCTCCGGGGCCAGCTGCCAGTCAGGTAGCAGAACCTCTTGCAGCTGAGAAGCCCCCA
TTGCCACCTCCCAATGAAGAAGCACCACCTCCGCTCTCACCTGAGGAACCCCAGTCAGAAGACTCAGAAG
ACTCGGAAGACTCTGAGGAGGATGCTAGATTTAAACAGTTGAAGGCTATAGCAGCACATTGGCAGGCTGC
AGCAGCACATTGGCAACAGCAGCAGCAGCAGCGAGTCGGCTTCCAGTATCAAGGAATAATGCAGAGGCAC
ACACAGTTACAGCAGATCCTGCAGCAGTACCAGCAAGTTATCCAGCACTCACCACACATACAGACCATGT
CTCTGGATGTGCAGCTGCGACATTATGAGATGCAGCAGCAACAGTTTCAACATCTCTTTCAAGACTGGGA
GCGAGAGTTTCAGCTGTGGGAGGAGCAGCTCCATTCCTATCCTCATAAAGATCAGCTTCAGGAGTATGAG
AAGCAGTGGAAGACATGGCAGGGACATATGAAAGCCACTCAGACCTATCTCCAGGAGAAAGTCAACTCGT
TCCAGACTGTGAAGAGCCAGTACCTGGGGAACATGGCAATGCCACCTCCGTTTGTTCCGTATTCTCAGAT
GCCTCCACCTCTGCCAACAATGCCACCTCCAGTATTACCTCCATCCTTGCCACCACCAGTGATGCCCCCT
GCCCTGCCTACCTCCATCCCACCACCTGGCATGCCTCCGCCTGTGATGCCACCTTCTCTGCCAACCTCTG
TCCCCCCACCAGGAATGCCTCCATCTCTTTCTTCAGGGCCACCTCCAGTTCTCCCTCCACCTGCCCTCTC
TTCAGCAGGGTCACCACCAGTCCTTCCCCCACCGGCTCTACCTGGGGGACCACCCATCCTACCCCTCCCA
CCATTATCTTCAGCCACACCTCCCCCAGGAATACCTCCCCCTGGAGCTCCACAAGGGATGCCTCCTCAGT
TAACAGCCCCACTTCCACCAGCTTCTGGTTCTCAGAACTCACAGATCCCAGAGAAACCTAGACAAGCACT
GCTTCCCACACCTGTGTCTTTTGGATCGACCCCACCTTCACCATATCACCCTCCACCTCAGTCAGAACAA
GTGAATTCCAAACCTCTGAACAAGGTGTTCTCATCTGAGCAAGGACTGGGCGAGTCTTCTGCTCTATCTC
AGTCCATCATTGCAGCTAAGGACACGCCAGTGAAGTCAGGTGGACTGCTTGCAGACCCTCCTAAGGGCAG
TTTCTTGGAAGGTCCGAGAGGTCCAAGAGAACAGAAAGAGCAGCTTCAAAAGTTGAAAGACTTTGGGTCT
GAGCCACAGATGGCTGACCATCTACCACCCCCAGACTCAAGACTACAGAATCCATCAAGACCTGGGATGT
ATCCGCCTCCAGGATCCTATAGACCACCCCCTCCTATGGGTAAGCCACCTGGGTCAATTGTAAGACCCTC
TGCTCCACCAGCAAGATCATCTATTCCTATGACTAGGCCTCCTGTGCCAATACCACCACCGCCTCCTCCA
CCTCCACCACCACCACCTCCTCCTCCAGTTATAAAGTCAAAAACCTCATCTGTGAAACAGGAACGCTGGG
ATGAAGATTCTTTCTTTGGGCTCTGGGATACAAATGATGATCAAGGACTGAATTCAGAATTTAAGCGAGA
CACTGCAACAATTCCGTCTGCTCCGGTGTTACCACCCCCACCTGTTCATTCTTCCATTCCCCCTCCTGGC
CCAATGCCTATGGGTATGCCACCAATGTCCAAACCACCACCAGTGCAGCATACAGTTGACTATGGCCATG
GCCGAGATATGCCTACTAATAAAGTTGAACAGATACCATATGGAGAAAGAATAACTCTACGTCCAGATCC
ATTACCTGAAAGGTCAACTTTTGATGCAGATCATGCAGGCCAGCGTGATCGCTATGATAGAGATAGAGAC
CGTGAACCTTATTTTGACCGTCCAAGTAATATAACAGATCATCGAGATTTTAAAAGGGACCGAGAGACAC
ATAGAGATAGAGACCGAGATCGTGTTCTTGACTATGAGCGGGACCGATTTGACAGAGAGCGCAGACCCCG
AGATGACAGGAATCAATCATATCGAGACAAAAAAGACCATTCTTCATCCAGAAGAGGAGGGTTTGACAGG
CCATCCTATGACCGGAAGTCTGATAGACCACCCTATGAAGGCCCACCCATGTTTGGAGGAGAACGAAGAA
CTTACCCAGAGGAGCGCATGCCCCTTCCAGCTCCTGCCCTGGGCCACCAGCCACCTCCAGTTCCTCGGGT
TGAGAAGAAGCCGGAGTCCAAAAATGTGGATGACATTCTGAAACCGCCGGGCCGGGAGAGCCGGCCTGAA
AGAATTGTTGTTATAATGAGAGGATTGCCTGGCAGTGGAAAGACACATGTTGCAAAACTTATCCGGGATA
AGGAAGTAGAATTTGGAGGACCTGCCCCCAGGGTTTTAAGTCTAGATGATTATTTCATCGCTGAAGTAGA
AAAAGAAGAAAAAGATCCAGATTCTGGAAAGAAAGTAAAAAAGAAGGTAATGGAATATGAATATGAAGCT
GACATGGAAGAGACTTATCGCACCAGCATGTTCAAAACTTTCAAAAAGACTCTAGATGACGGCTTTTTCC
CTTTCATTATTCTGGATGCTATCAATGACAGAGTTAGACATTTTGATCAGTTTTGGAGTGCAGCGAAAAC
CAAGGGTTTTGAGGTGTATTTGGCTGAAATGAGTGCTGATAACCAGACTTGTGGCAAGAGAAATATTCAT
GGAAGAAAGCTTAAAGAAATAAACAAGATGGCTGAACACTGGGAAGTTGCACCTCGTCACATGATGCGTC
TAGACATCCGCTCCCTGCTACAAGATGCTGCGATTGAAGAAGTAGAGATGGAAGATTTTGATGCTAACAT
TGAAGACCAGAAGGAAGAAAAGAAAGATGCAGAAGAAGAGGAAAGCGAACTGGGTTACATTCCGAAAAGC
AAATGGGAGATGGACACTTCTGAGGCAAAGCTAGACAAGTTGGATGGCTTGAGGACTGGTACTAAAAGGA
AGCGAGACTGGGAGGCGATTGCCAGCAGAATGGAGGATTACCTTCAGCTCCCTGACGACTACGAGACTCG
CGCTTCTGAGCCTGGGAAGAAGAGGGTGAGATGGGCAGACCTAGAAGAAAAGAAGGATGCAGATAGGAAA
AGGGCCATAGGTTTTGTGGTCGGACAGACTGATTGGGAGAAGATCACAGATGAGAGTGGTCACCTGGCTG
AAAGAGCCCTCAATCGGACCAAATATATATGA

Translation (1433 aa):
MYPNWGRYGGSSHYPPPPVPPPPPPVALPEASPGPGYSSSTAPAAPSSSGFMSFREQHLAQLQQLQQMHQ
KQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMIHHQRDGPPGLV
PMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLPPAQPSPSQSPPSQSYLAPTPSYSS
SSSSQSYLSHSQPYLPPSQASPSRSSQGPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQKQAAPE
PDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGLVTAKDVPEPIKEEAPGPAASQVAEPLAAEKPP
LPPPNEEAPPPLSPEEPQSEDSEDSEDSEEDARFKQLKAIAAHWQAAAAHWQQQQQQRVGFQYQGIMQRH
TQLQQILQQYQQVIQHSPHIQTMSLDVQLRHYEMQQQQFQHLFQDWEREFQLWEEQLHSYPHKDQLQEYE
KQWKTWQGHMKATQTYLQEKVNSFQTVKSQYLGNMAMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPP
ALPTSIPPPGMPPPVMPPSLPTSVPPPGMPPSLSSGPPPVLPPPALSSAGSPPVLPPPALPGGPPILPLP
PLSSATPPPGIPPPGAPQGMPPQLTAPLPPASGSQNSQIPEKPRQALLPTPVSFGSTPPSPYHPPPQSEQ
VNSKPLNKVFSSEQGLGESSALSQSIIAAKDTPVKSGGLLADPPKGSFLEGPRGPREQKEQLQKLKDFGS
EPQMADHLPPPDSRLQNPSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSIPMTRPPVPIPPPPPP
PPPPPPPPPVIKSKTSSVKQERWDEDSFFGLWDTNDDQGLNSEFKRDTATIPSAPVLPPPPVHSSIPPPG
PMPMGMPPMSKPPPVQHTVDYGHGRDMPTNKVEQIPYGERITLRPDPLPERSTFDADHAGQRDRYDRDRD
REPYFDRPSNITDHRDFKRDRETHRDRDRDRVLDYERDRFDRERRPRDDRNQSYRDKKDHSSSRRGGFDR
PSYDRKSDRPPYEGPPMFGGERRTYPEERMPLPAPALGHQPPPVPRVEKKPESKNVDDILKPPGRESRPE
RIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFIAEVEKEEKDPDSGKKVKKKVMEYEYEA
DMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIH
GRKLKEINKMAEHWEVAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEDQKEEKKDAEEEESELGYIPKS
KWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYETRASEPGKKRVRWADLEEKKDADRK
RAIGFVVGQTDWEKITDESGHLAERALNRTKYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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