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Report for CCDS88330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88330.1 Public Mus musculus 12 Crppa 23 108 98 CCDS HistoryNCBI Gene:75847Re-query CCDS DB by CCDS ID:88330.1Re-query CCDS DB by GeneID:75847See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220519.1 ENSMUSP00000152423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220519.1Link to Ensembl Protein Viewer:ENSMUSP00000152423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220519Re-query CCDS DB by Protein ID:ENSMUSP00000152423
Original member Current member NCBI NM_001289504.1 NP_001276433.1 Accepted alive Link to Nucleotide Sequence:NM_001289504.1Link to Protein Sequence:NP_001276433.1Re-query CCDS DB by Nucleotide ID:NM_001289504Re-query CCDS DB by Protein ID:NP_001276433Link to BLAST:NP_001276433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276433.1 286 Q5RJG7-3 286 100% 0 0

Chromosomal Locations for CCDS 88330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 36381774 36382024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36390346 36390622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36426289 36426438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36473102 36473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36476700 36476777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGAGCCTGGGCCGTGCAGCAGGCCCGCTGAGCCTGGGCATTGCGTGAGCGGCCCCGCGGGCGCGGGCT
CAGCGTTCCCGGAGTCCCCGTTGTCCGTCGCTGGGGCGGAGCCCGGGAACCGCCCTGGAACCGTGGCCGC
CGTGCTGCCGGCTGGGGGTTGCGGGGAAAGGATGGGCGTCCGCACCCCGAAGCAGTTCTGCCGGGTTCTG
GAAAGGCCGCTCATCAGCTACACTTTGCAGGCTATGGAGAGAGTATGCTGGATAAAGGACATTGTTGTGA
CAGTGACAGGGGAGAACATGGAAGCAATGAGAAGTATCATCCAGAGGTATGGGCATAAGCGCATCTCACT
AGCTGAGGCTGGAGCCACGCGCCACAGATCAATTTTCAATGGACTGAAAGCCCTGGCAGAAGATCAGCCA
GACTGTAAACTCACTAAGCCAGAAGTGGTGATTATCCATGACGCCGTGAGACCTTTTGTTGAGGAAGATA
TCCTCCTGAGAGTTGTCTTAGCAGCTAAGGAACATGGGGCAGCAGGAGCAATTCGACCTCTGGTGTCCAC
TGTCATCAGTCCCTCTGCTGATGGTCACTTAGACCACTCACTGGACCGTGCCAAGCATAGGGCAAGCGAA
ATGCCCCAGGCTTTTCTCTTTGATGTCATCTATGAAGCGTATCAGCAGTGTAGTGATTTTGACTTGGAAT
TTGGAACAGAGTGCTTGCAGTTGGCTCTAAAATACTGTCACAGGAAAGCAAAACTTGTAGAAGGGCCCCC
TGCCCTCTGGAAGGTGACCTACAAACAAGACCTGTGTGCAGCTGAAGCCATGATTAAAGGTGTGTTCAAC
CTTGTGACTGTCAGCGCCTGA

Translation (286 aa):
MEPGPCSRPAEPGHCVSGPAGAGSAFPESPLSVAGAEPGNRPGTVAAVLPAGGCGERMGVRTPKQFCRVL
ERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGATRHRSIFNGLKALAEDQP
DCKLTKPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIRPLVSTVISPSADGHLDHSLDRAKHRASE
MPQAFLFDVIYEAYQQCSDFDLEFGTECLQLALKYCHRKAKLVEGPPALWKVTYKQDLCAAEAMIKGVFN
LVTVSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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