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Report for CCDS88305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88305.1 Public Mus musculus 12 Itsn2 23 108 98 CCDS HistoryNCBI Gene:20403Re-query CCDS DB by CCDS ID:88305.1Re-query CCDS DB by GeneID:20403See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220311.1 ENSMUSP00000151896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220311.1Link to Ensembl Protein Viewer:ENSMUSP00000151896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220311Re-query CCDS DB by Protein ID:ENSMUSP00000151896
Original member Current member NCBI NM_001198968.2 NP_001185897.1 Accepted alive Link to Nucleotide Sequence:NM_001198968.2Link to Protein Sequence:NP_001185897.1Re-query CCDS DB by Nucleotide ID:NM_001198968Re-query CCDS DB by Protein ID:NP_001185897Link to BLAST:NP_001185897.1

Chromosomal Locations for CCDS 88305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4613275 4613305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4624891 4624983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4626530 4626593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4627833 4627996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4629545 4629751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4629868 4629964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4630637 4630776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4632374 4632437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4632936 4633073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4633477 4633562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4634535 4634797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4635581 4635730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4636547 4636687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4637739 4637826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4639655 4639794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4640913 4640993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4649983 4650119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4652351 4652487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4653446 4653543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4658015 4658190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4658442 4658571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4661859 4662064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4664537 4664622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4666160 4666326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4671273 4671318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4671402 4671523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4672737 4672833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4673416 4673607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4697142 4697263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4700320 4700426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4701182 4701365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4706260 4706358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4706965 4707132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4707530 4707745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4708113 4708234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4708945 4709027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4711953 4712036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4712467 4712640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4713040 4713197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5058 nt):
ATGATGGCTCAGTTTCCCACAGCGATGAATGGAGGGCCAAATATGTGGGCTATTACATCTGAAGAACGTA
CTAAGCATGATAAACAGTTTGATAACCTCAAACCTTCAGGAGGTTACATAACAGGTGATCAAGCCCGTAC
TTTTTTCCTACAGTCAGGTCTGCCGGCCCCGGTTTTAGCTGAAATATGGGCCTTATCAGATCTGAACAAG
GATGGGAAGATGGACCAGCAAGAGTTCTCTATAGCTATGAAACTCATCAAGTTAAAGTTGCAGGGCCAAC
AGCTGCCTGTAGTCCTCCCTCCTATCATGAAACAACCCCCTATGTTCTCTCCACTAATCTCTGCTCGTTT
TGGGATGGGAAGCATGCCCAATCTGTCCATTCATCAGCCATTGCCTCCAGTTGCACCTATAGCAACACCC
TTGTCTTCTGCTACTTCAGGGACCAGTATTCCTCCCCTAATGATGCCTGCTCCCCTAGTGCCTTCTGTTA
GTACATCCTCATTACCAAATGGAACTGCCAGTCTCATTCAGCCTTTATCCATTCCTTATTCTTCTTCAAC
ATTGCCTCATGCATCATCTTACAGCCTGATGATGGGAGGATTTGGTGGTGCTAGTATCCAGAAGGCCCAG
TCTCTGATTGATTTAGGATCTAGTAGCTCAACTTCCTCAACTGCTTCCCTCTCAGGGAACTCACCTAAGA
CAGGGACCTCAGAGTGGGCAGTTCCTCAGCCTTCAAGATTAAAGTATCGGCAAAAATTTAATAGTCTAGA
CAAAGGCATGAGCGGATACCTCTCAGGTTTTCAAGCTAGAAATGCCCTTCTTCAGTCAAATCTCTCTCAA
ACTCAGCTAGCTACTATTTGGACTCTGGCTGACATCGATGGTGACGGACAGTTGAAAGCTGAAGAATTTA
TTCTGGCGATGCACCTCACTGACATGGCCAAAGCTGGACAGCCACTACCACTGACGTTGCCTCCCGAGCT
TGTCCCTCCATCTTTCAGAGGGGGAAAGCAAGTTGATTCTGTTAATGGAACTCTGCCTTCATATCAGAAA
ACACAAGAAGAAGAGCCTCAGAAGAAACTGCCAGTTACTTTTGAGGACAAACGGAAAGCCAACTATGAAC
GAGGAAACATGGAGCTGGAGAAGCGACGCCAAGTGTTGATGGAGCAGCAGCAGAGGGAGGCTGAACGCAA
AGCCCAGAAAGAGAAGGAAGAGTGGGAGCGGAAACAGAGAGAACTGCAAGAGCAAGAATGGAAGAAGCAG
CTGGAGTTGGAGAAACGCTTGGAGAAACAGAGAGAGCTGGAGAGACAGCGGGAGGAAGAGAGGAGAAAGG
AGATAGAAAGACGAGAGGCAGCAAAACAGGAGCTTGAGAGACAACGCCGTTTAGAATGGGAAAGACTCCG
TCGGCAGGAGCTGCTCAGTCAGAAGACCAGGGAACAAGAAGACATTGTCAGGCTGAGCTCCAGAAAGAAA
AGTCTCCACCTGGAACTGGAAGCAGTGAATGGAAAACATCAGCAGATCTCAGGCAGACTACAAGATGTCC
AAATCAGAAAGCAAACACAAAAGACTGAGCTAGAAGTTTTGGATAAACAGTGTGACCTGGAAATTATGGA
AATCAAACAACTTCAACAAGAGCTTAAGGAATATCAAAATAAGCTTATCTATCTGGTCCCTGAGAAGCAG
CTATTAAACGAAAGAATTAAAAACATGCAGCTCAGTAACACACCTGATTCAGGGATCAGTTTACTTCATA
AAAAGTCATCAGAAAAGGAAGAATTATGCCAAAGACTTAAAGAACAATTAGATGCTCTTGAAAAAGAAAC
TGCATCTAAGCTCTCAGAAATGGATTCATTTAACAATCAGCTGAAGTGTGGGAGTATGGATGACTGTGTC
CTTCAGTGCCTTTTGTCTCTGCTGAGCTGTCTCAACAACCTCTTCCTCTTACTTAAGGAACTCAGAGAAA
GCTATAATACACAGCAGTTAGCCCTTGAACAACTTCATAAAATCAAACGTGACAAATTGAAGGAAATCGA
AAGAAAAAGATTAGAGCAAATTCAAAAAAAGAAACTAGAAGATGAGGCTGCAAGGAAAGCAAAGCAAGGA
AAAGAAAACTTGTGGAGAGAAAGTATTAGAAAGGAAGAAGAGGAAAAGCAAAAACGACTCCAGGAAGAAA
AGTCACAGGACAAAACTCAAGAAGAGGAACGAAAAGCTGAGGCAAAACAAAGTGAGACAGCCAGTGCTTT
GGTGAATTACAGAGCACTGTACCCTTTTGAAGCAAGAAACCATGATGAGATGAGTTTTAGTTCTGGGGAT
ATAATTCAGGTTGATGAAAAAACTGTAGGAGAGCCTGGTTGGCTTTATGGTAGTTTTCAGGGAAAGTTTG
GCTGGTTCCCGTGCAACTATGTAGAAAAAGTGCTGTCAAGTGAAAAAGCTCTGTCTCCTAAGAAGGCCTT
ACTTCCTCCTACAGTGTCTCTCTCTGCTACCTCAACTTCTTCCCAGCCACCAGCATCAGTGACTGATTAT
CACAATGTATCCTTCTCAAACCTTACTGTTAATACAACATGGCAGCAGAAGTCAGCTTTTACCCGCACTG
TGTCCCCTGGATCTGTGTCCCCCATTCACGGACAGGGGCAGGCTGTAGAAAACCTGAAAGCCCAGGCCCT
TTGTTCCTGGACGGCAAAGAAGGAGAACCACCTGAACTTCTCAAAGCACGACGTCATCACTGTCCTGGAG
CAGCAGGAAAACTGGTGGTTTGGGGAGGTGCACGGAGGAAGAGGATGGTTCCCCAAGTCTTATGTCAAGC
TCATTCCTGGGAATGAAGTACAGCGAGGAGAGCCAGAAGCTTTGTATGCAGCTGTGACTAAGAAACCTAC
CTCCACAGCCTATCCAGTTACCTCCACAGCCTATCCAGTTGGAGAAGACTACATTGCACTTTATTCATAC
TCAAGTGTAGAGCCCGGGGATTTGACTTTCACTGAAGGTGAAGAAATTCTAGTGACCCAGAAAGATGGAG
AGTGGTGGACAGGAAGTATTGGAGAGAGAACTGGAATCTTCCCGTCCAACTACGTCAGACCAAAGGATCA
AGAGAATTTTGGGAATGCTAGCAAATCTGGAGCATCAAACAAAAAACCCGAGATCGCTCAAGTAACTTCA
GCATATGCTGCTTCAGGGACTGAGCAGCTCAGCCTTGCGCCAGGACAGTTAATATTAATCTTAAAGAAAA
ACACAAGCGGGTGGTGGCAAGGAGAGCTACAGGCCAGAGGGAAGAAACGACAGAAGGGATGGTTTCCTGC
CAGCCATGTAAAGCTGCTAGGTCCAAGCAGTGAAAGAACCATGCCTACTTTTCACGCTGTATGTCAAGTG
ATTGCTATGTATGACTACATGGCGAATAACGAAGATGAGCTCAATTTCTCCAAAGGACAGCTGATTAATG
TTATGAACAAAGATGACCCTGACTGGTGGCAAGGAGAAACCAATGGTCTGACTGGTCTCTTTCCTTCAAA
CTATGTTAAGATGACAACAGACTCAGATCCAAGTCAACAGTGGTGTGCTGACCTCCAAGCCCTGGACACA
ATGCAGCCTACGGAGAGGAAGCGACAGGGCTACATTCACGAGCTCATTCAGACAGAGGAGCGGTACATGG
ACGACCTGCAGCTGGTCATCGAGGTCTTCCAGAAACGGATGGCTGAGTCAGGCTTCCTCACTGAAGCAGA
CATGGCTCTGATCTTTGTGAACTGGAAAGAGCTCATCATGTCCAACACGAAGCTGCTGAGGGCCTTGCGG
GTGAGGAAGAAGACTGGGGGTGAGAAGATGCCAGTTCAGATGATTGGAGACATCCTGGCGGCAGAGCTGT
CCCACATGCAGGCCTACATCCGCTTCTGCAGCTGTCAGCTTAATGGGGCAACCCTGTTACAGCAGAAGAC
AGACGAGGACACGGACTTCAAGGAATTTCTAAAGAAGTTGGCATCAGACCCACGATGCAAAGGGATGCCC
CTCTCCAGCTTCCTGCTGAAGCCCATGCAGAGGATCACTCGCTACCCGCTGCTCATCCGAAGTATCCTGG
AGAACACTCCACAGAGTCATGTTGACCACTCCTCCCTGAAGCTGGCCCTAGAACGTGCTGAGGAGCTGTG
CTCTCAGGTGAACGAGGGAGTCCGGGAGAAGGAAAATTCAGACCGGCTGGAGTGGATCCAGGCACACGTG
CAGTGCGAAGGCTTGGCAGAGCAACTTATTTTCAACTCCCTCACCAACTGCCTGGGCCCCCGGAAGCTTC
TGCACAGCGGGAAGCTGTACAAGACCAAGAGCAATAAGGAGCTGCACGCCTTCCTCTTCAACGACTTCCT
GCTGCTCACCTACCTGGTCAGGCAGTTTGCCGCCGCCTCTGGCCACGAGAAGCTCTTCAACTCCAAGTCC
AGTGCTCAGTTCCGGATGTACAAAACGCCCATTTTCCTGAATGAAGTGTTGGTGAAACTTCCCACAGACC
CTTCCAGCGATGAGCCCGTCTTCCACATTTCCCACATTGATCGTGTGTACACACTCCGAACAGACAACAT
CAACGAGAGGACGGCCTGGGTCCAGAAGATCAAGGGTGCCTCAGAGCAGTACATCGACACTGAGAAGAAG
AAACGGGAAAAGGCTTACCAAGCCCGTTCTCAAAAGACTTCAGGTATTGGGCGTCTGATGGTGCATGTCA
TTGAAGCTACAGAATTAAAAGCCTGCAAACCAAACGGGAAAAGTAATCCATACTGTGAAGTCAGCATGGG
CTCCCAAAGCTATACCACCAGGACCCTGCAGGACACACTAAACCCCAAGTGGAACTTCAACTGCCAGTTC
TTCATCAAGGATCTTTACCAGGACGTTCTGTGTCTCACTATGTTTGACAGAGACCAGTTTTCTCCAGATG
ACTTCTTGGGTCGTACTGAAGTTCCAGTGGCAAAAATCCGAACAGAACAGGAAAGCAAAGGCCCCACCAC
CCGCCGACTACTACTGCACGAAGTCCCCACTGGAGAAGTCTGGGTCCGCTTTGACCTGCAACTTTTTGAA
CAAAAAACTCTCCTTTGA

Translation (1685 aa):
MMAQFPTAMNGGPNMWAITSEERTKHDKQFDNLKPSGGYITGDQARTFFLQSGLPAPVLAEIWALSDLNK
DGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIHQPLPPVAPIATP
LSSATSGTSIPPLMMPAPLVPSVSTSSLPNGTASLIQPLSIPYSSSTLPHASSYSLMMGGFGGASIQKAQ
SLIDLGSSSSTSSTASLSGNSPKTGTSEWAVPQPSRLKYRQKFNSLDKGMSGYLSGFQARNALLQSNLSQ
TQLATIWTLADIDGDGQLKAEEFILAMHLTDMAKAGQPLPLTLPPELVPPSFRGGKQVDSVNGTLPSYQK
TQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVLMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQ
LELEKRLEKQRELERQREEERRKEIERREAAKQELERQRRLEWERLRRQELLSQKTREQEDIVRLSSRKK
SLHLELEAVNGKHQQISGRLQDVQIRKQTQKTELEVLDKQCDLEIMEIKQLQQELKEYQNKLIYLVPEKQ
LLNERIKNMQLSNTPDSGISLLHKKSSEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKCGSMDDCV
LQCLLSLLSCLNNLFLLLKELRESYNTQQLALEQLHKIKRDKLKEIERKRLEQIQKKKLEDEAARKAKQG
KENLWRESIRKEEEEKQKRLQEEKSQDKTQEEERKAEAKQSETASALVNYRALYPFEARNHDEMSFSSGD
IIQVDEKTVGEPGWLYGSFQGKFGWFPCNYVEKVLSSEKALSPKKALLPPTVSLSATSTSSQPPASVTDY
HNVSFSNLTVNTTWQQKSAFTRTVSPGSVSPIHGQGQAVENLKAQALCSWTAKKENHLNFSKHDVITVLE
QQENWWFGEVHGGRGWFPKSYVKLIPGNEVQRGEPEALYAAVTKKPTSTAYPVTSTAYPVGEDYIALYSY
SSVEPGDLTFTEGEEILVTQKDGEWWTGSIGERTGIFPSNYVRPKDQENFGNASKSGASNKKPEIAQVTS
AYAASGTEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERTMPTFHAVCQV
IAMYDYMANNEDELNFSKGQLINVMNKDDPDWWQGETNGLTGLFPSNYVKMTTDSDPSQQWCADLQALDT
MQPTERKRQGYIHELIQTEERYMDDLQLVIEVFQKRMAESGFLTEADMALIFVNWKELIMSNTKLLRALR
VRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQLNGATLLQQKTDEDTDFKEFLKKLASDPRCKGMP
LSSFLLKPMQRITRYPLLIRSILENTPQSHVDHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHV
QCEGLAEQLIFNSLTNCLGPRKLLHSGKLYKTKSNKELHAFLFNDFLLLTYLVRQFAAASGHEKLFNSKS
SAQFRMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKGASEQYIDTEKK
KREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEVSMGSQSYTTRTLQDTLNPKWNFNCQF
FIKDLYQDVLCLTMFDRDQFSPDDFLGRTEVPVAKIRTEQESKGPTTRRLLLHEVPTGEVWVRFDLQLFE
QKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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