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Report for CCDS88246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88246.1 Public Mus musculus 11 Gsdma2 23 108 98 CCDS HistoryNCBI Gene:76758Re-query CCDS DB by CCDS ID:88246.1Re-query CCDS DB by GeneID:76758See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017355.11 ENSMUSP00000017355.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017355.11Link to Ensembl Protein Viewer:ENSMUSP00000017355.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017355Re-query CCDS DB by Protein ID:ENSMUSP00000017355
Original member Current member NCBI NM_001363221.1 NP_001350150.1 Accepted alive Link to Nucleotide Sequence:NM_001363221.1Link to Protein Sequence:NP_001350150.1Re-query CCDS DB by Nucleotide ID:NM_001363221Re-query CCDS DB by Protein ID:NP_001350150Link to BLAST:NP_001350150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350150.1 276 Q32M21-2 276 100% 0 0

Chromosomal Locations for CCDS 88246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98649211 98649267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98651974 98652070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98652541 98652630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98654869 98655023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98655491 98655605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98657224 98657297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98657513 98657755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTGCGCACCGACTACACTCTCCTGGATGTGCTGGAGCCGGGCAGCTCCCCCTCAGGGATCCGTGAACC
ACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTGATCATCTATGG
GAAAGATGAGTGGGGCATTCCATACATTTGTACTGACAACATGCCAACCTTTAACCCCCTGTGTGTGCTT
CAGAGACAAGGCAGTACTGTCCAGATGATATCTGGGGAGATGCACGAAGACTTCAAGACATTAAAGAAAG
AGGTTCAGCAAGAGACTCAAGAAGTGGAGAAGTTGAGTCCAGTGGGGCGAAGCTCCCTACTCACTTCCCT
CAGCCATCTCCTAGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGATGCTTGAAGGGGCTCTAGACAAG
GGACACGAAGTGACCCTTGAAGCACTCCCCAAAGATGTCCTGCTGTTAAAGGACGCTATGGACGCCATCC
TCTACTTCCTCGGGGCTCTGACAGAGCTAAGTGAAGAACAACTGAAGATTCTAGTAAAATCCTTGGAGAA
CAAGGTCCTACCGGTGCAACTGAAGCTGGTTGAGAGCATCTTGGAACAGAACTTCCTGCAAGATAAAGAG
GATGTTTTCCCCCTGCGACCTGATCTGCTCTCCTCCCTCGGGGAGGAGGACCAGATTCTAACAGAAGCAC
TGGTGGGACTAAGCGGCCTGGAAGTCCAGAGATCAGGGCCCCAGTACACGTGGAATCCAGACACTTGTCA
CAACCTCTGTGCCCTCTATGCTGGCCTCTCCCTCCTTCACCTGCTAAGCAGGGATTCCTAA

Translation (276 aa):
MCAPTTLSWMCWSRAAPPQGSVNHKEAVTIPKGCVLAYRVRQLIIYGKDEWGIPYICTDNMPTFNPLCVL
QRQGSTVQMISGEMHEDFKTLKKEVQQETQEVEKLSPVGRSSLLTSLSHLLGKKKELQDLEQMLEGALDK
GHEVTLEALPKDVLLLKDAMDAILYFLGALTELSEEQLKILVKSLENKVLPVQLKLVESILEQNFLQDKE
DVFPLRPDLLSSLGEEDQILTEALVGLSGLEVQRSGPQYTWNPDTCHNLCALYAGLSLLHLLSRDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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