NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88217.1 Public Mus musculus 11 Msi2 23 108 98 CCDS HistoryNCBI Gene:76626Re-query CCDS DB by CCDS ID:88217.1Re-query CCDS DB by GeneID:76626See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107909.7 ENSMUSP00000103542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107909.7Link to Ensembl Protein Viewer:ENSMUSP00000103542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107909Re-query CCDS DB by Protein ID:ENSMUSP00000103542
Original member Current member NCBI NM_001363195.1 NP_001350124.1 Accepted alive Link to Nucleotide Sequence:NM_001363195.1Link to Protein Sequence:NP_001350124.1Re-query CCDS DB by Nucleotide ID:NM_001363195Re-query CCDS DB by Protein ID:NP_001350124Link to BLAST:NP_001350124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350124.1 328 Q920Q6-2 328 100% 0 0

Chromosomal Locations for CCDS 88217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88347084 88347125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88348784 88348938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88366785 88366847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88386045 88386119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88394565 88394679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88413908 88413990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88480006 88480054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88590055 88590147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88712438 88712479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88716510 88716594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88717290 88717371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88717705 88717745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88718029 88718090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGAGGCAAATGGGAGCCCAGGCACCTCGGGCAGCGCCAACGACTCCCAGCACGACCCCGGTAAAATGT
TTATCGGTGGACTGAGCTGGCAGACCTCACCAGATAGCCTTAGAGACTATTTTAGCAAATTTGGAGAAAT
TAGAGAATGTATGGTCATGAGAGATCCCACAACGAAACGCTCCAGAGGCTTCGGTTTCGTCACCTTCGCA
GACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACGATTGACCCAA
AAGTTGCATTTCCTCGTCGAGCGCAACCTAAGATGGTCACAAGAACAAAGAAAATCTTCGTAGGAGGATT
GTCTGCAAACACAGTAGTGGAAGATGTAAAGCAGTATTTCGAGCAGTTTGGCAAGGTAGAGGATGCGATG
CTGATGTTCGACAAAACCACCAACAGGCACAGAGGGTTTGGCTTTGTCACCTTTGAGAATGAAGACGTTG
TGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAAATGGTAGAATGTAAGAAAGCTCAGCC
GAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGGCTGCCATACACCATGGATGCGTTC
ATGCTTGGCATGGGGATGCTGGGCTACCCCAACTTTGTGGCAACCTATGGCAGAGGCTACCCCGGATTTG
CTCCTAGCTATGGCTACCAGTTCCCAGGCTTCCCGGCGGCAGCTTATGGACCAGTGGCAGCGGCAGCTGT
GGCAGCGGCTCGAGGATCAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGA
CCTGTCGCCGATCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGCGCGGCCAGCC
CACAGCCGGGCTCCGGCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATA
CCACTGA

Translation (328 aa):
MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA
DPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAM
LMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAF
MLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPG
PVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH