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Report for CCDS88203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88203.1 Public Mus musculus 11 Ksr1 23 108 98 CCDS HistoryNCBI Gene:16706Re-query CCDS DB by CCDS ID:88203.1Re-query CCDS DB by GeneID:16706See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226282.1 ENSMUSP00000154385.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226282.1Link to Ensembl Protein Viewer:ENSMUSP00000154385.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226282Re-query CCDS DB by Protein ID:ENSMUSP00000154385
Original member Current member NCBI NM_001348207.1 NP_001335136.1 Accepted alive Link to Nucleotide Sequence:NM_001348207.1Link to Protein Sequence:NP_001335136.1Re-query CCDS DB by Nucleotide ID:NM_001348207Re-query CCDS DB by Protein ID:NP_001335136Link to BLAST:NP_001335136.1

Chromosomal Locations for CCDS 88203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79016185 79016263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79018300 79018380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79019562 79019695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79020355 79020490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79020682 79020813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79021387 79021520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79025243 79025339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79027417 79027799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79028475 79028523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79029029 79029083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79033218 79033383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79036495 79036601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79036687 79036748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79038152 79038235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79040877 79040937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79043196 79043200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79044845 79045268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79047297 79047444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79059658 79059777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGCATTGCCTGTGGAGTTGGGTGACCACAAAGGCGTCAAGGGACCCAGAAGCCCCACCACCCACCTTGC
CGAGAGAAGCCCAAGGCTCAAGCCAGCCTGCACCAGATGAGAGTTGTGAGGAGATCCCCCAAGAGCTCAC
ACTGGATGCTCTGCTGGAGATGGACGAGGCCAAAGCCAAGGAGATGCTGCGGCGCTGGGGGGCCAGCACG
GAGGAGTGCAGCCGCCTACAGCAAGCCCTTACCTGCCTTCGGAAGGTGACTGGCCTGGGAGGGGAGCACA
AAATGGACTCAGGTTGGAGTTCAACAGATGCTCGAGACAGTAGCTTGGGGCCTCCCATGGACATGCTTTC
CTCGCTGGGCAGAGCGGGTGCCAGCACTCAGGGACCCCGTTCCATCTCCGTGTCCGCCCTGCCTGCCTCA
GACTCTCCGGTCCCCGGCCTCAGTGAGGGCCTCTCGGACTCCTGTATCCCCTTGCACACCAGCGGCCGGC
TGACCCCCCGGGCCCTGCACAGCTTCATCACGCCCCCTACCACACCCCAGCTACGACGGCACGCCAAGCT
GAAGCCACCAAGGACACCCCCACCGCCAAGCCGCAAGGTCTTCCAGCTGCTCCCCAGCTTCCCCACACTC
ACACGGAGCAAGTCCCACGAGTCCCAGCTGGGAAACCGAATCGACGACGTCACCCCGATGAAGTTTGAAC
TCCCTCATGGATCCCCACAGCTGGTACGAAGGGATATCGGGCTCTCGGTGACGCACAGGTTCTCCACAAA
GTCATGGTTGTCACAGGTGTGCAACGTGTGCCAGAAGAGCATGATTTTTGGCGTGAAGTGCAAACACTGC
AGGTTAAAATGCCATAACAAGTGCACAAAGGAAGCTCCCGCCTGCAGGATCACCTTCCTCCCACTGGCCA
GGCTTCGGAGGACAGAGTCTGTCCCGTCAGATATCAACAACCCAGTGGACAGAGCAGCAGAGCCCCATTT
TGGAACCCTTCCCAAGGCCCTGACAAAGAAGGAGCACCCTCCAGCCATGAACCTGGACTCCAGCAGCAAC
CCATCCTCCACCACGTCCTCCACACCCTCATCGCCGGCACCTTTCCTGACCTCATCTAATCCCTCCAGTG
CCACCACGCCTCCCAACCCGTCACCTGGCCAGCGGGACAGCAGGTTCAGCTTCCCAGACATTTCAGCCTG
TTCTCAGGCAGCCCCGCTGTCCAGCACAGCCGACAGTACACGGCTCGACGACCAGCCCAAAACAGATGTG
CTAGGTGTTCACGAAGCAGAGGCTGAGGAGCCTGAGGCTGGCAAGTCAGAGGCAGAGGATGACGAGGAGG
ATGAGGTGGACGACCTCCCCAGCTCCCGCCGGCCCTGGAGGGGCCCCATCTCTCGAAAGGCCAGCCAGAC
CAGCGTTTACCTGCAAGAGTGGGACATCCCCTTTGAACAGGTGGAACTGGGCGAGCCCATTGGACAGGGT
CGCTGGGGCCGGGTGCACCGAGGCCGTTGGCATGGCGAGGTGGCCATTCGGCTGCTGGAGATGGACGGCC
ACAATCAGGACCACCTGAAGCTGTTCAAGAAAGAGGTGATGAACTACCGGCAGACGCGGCATGAGAACGT
GGTGCTCTTCATGGGGGCCTGCATGAACCCACCTCACCTGGCCATTATCACCAGCTTCTGCAAGGGGCGG
ACATTGCATTCATTCGTGAGGGACCCCAAGACGTCTCTGGACATCAATAAGACTAGGCAGATCGCCCAGG
AGATCATCAAGGGCATGGGTTATCTTCATGCAAAAGGCATCGTGCACAAGGACCTCAAGTCCAAGAATGT
CTTCTATGACAACGGCAAAGTGGTCATCACAGACTTCGGGCTGTTTGGGATCTCGGGTGTGGTCCGAGAG
GAACGGCGCGAGAACCAACTGAAACTGTCACATGACTGGCTGTGCTACCTGGCCCCCGAGATCGTACGAG
AAATGATCCCGGGGCGGGACGAGGACCAGCTGCCCTTCTCCAAAGCAGCCGATGTCTATGCATTCGGGAC
TGTGTGGTATGAACTACAGGCAAGAGACTGGCCCTTTAAGCACCAGCCTGCTGAGGCCTTGATCTGGCAG
ATTGGAAGTGGGGAAGGAGTACGGCGCGTCCTGGCATCCGTCAGCCTGGGGAAGGAAGTCGGCGAGATCC
TGTCTGCCTGCTGGGCTTTCGATCTGCAGGAGAGACCCAGCTTCAGCCTGCTGATGGACATGCTGGAGAG
GCTGCCCAAGCTGAACCGGCGGCTCTCCCACCCTGGGCACTTTTGGAAGTCGGCTGACCGCTGGCGGAGC
CGCTACTACGGGAAAGGACGCTATGGTCACCCCGACTTTAAGAACTCCTGTCCAGTTCTGGAGGAATACA
TTAACAGCAGCAAAGTCATGCCCCGCTTTGAAAGGTTTGGCCTGGGGACCCTGGAGTCCGGTAATCCAAA
GATGTAG

Translation (818 aa):
MHCLWSWVTTKASRDPEAPPPTLPREAQGSSQPAPDESCEEIPQELTLDALLEMDEAKAKEMLRRWGAST
EECSRLQQALTCLRKVTGLGGEHKMDSGWSSTDARDSSLGPPMDMLSSLGRAGASTQGPRSISVSALPAS
DSPVPGLSEGLSDSCIPLHTSGRLTPRALHSFITPPTTPQLRRHAKLKPPRTPPPPSRKVFQLLPSFPTL
TRSKSHESQLGNRIDDVTPMKFELPHGSPQLVRRDIGLSVTHRFSTKSWLSQVCNVCQKSMIFGVKCKHC
RLKCHNKCTKEAPACRITFLPLARLRRTESVPSDINNPVDRAAEPHFGTLPKALTKKEHPPAMNLDSSSN
PSSTTSSTPSSPAPFLTSSNPSSATTPPNPSPGQRDSRFSFPDISACSQAAPLSSTADSTRLDDQPKTDV
LGVHEAEAEEPEAGKSEAEDDEEDEVDDLPSSRRPWRGPISRKASQTSVYLQEWDIPFEQVELGEPIGQG
RWGRVHRGRWHGEVAIRLLEMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGR
TLHSFVRDPKTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVRE
ERRENQLKLSHDWLCYLAPEIVREMIPGRDEDQLPFSKAADVYAFGTVWYELQARDWPFKHQPAEALIWQ
IGSGEGVRRVLASVSLGKEVGEILSACWAFDLQERPSFSLLMDMLERLPKLNRRLSHPGHFWKSADRWRS
RYYGKGRYGHPDFKNSCPVLEEYINSSKVMPRFERFGLGTLESGNPKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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