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Report for CCDS88101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88101.1 Public Mus musculus 10 Arhgap9 23 108 98 CCDS HistoryNCBI Gene:216445Re-query CCDS DB by CCDS ID:88101.1Re-query CCDS DB by GeneID:216445See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219511.1 ENSMUSP00000151690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219511.1Link to Ensembl Protein Viewer:ENSMUSP00000151690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219511Re-query CCDS DB by Protein ID:ENSMUSP00000151690
Original member Current member NCBI NM_001285785.2 NP_001272714.1 Accepted alive Link to Nucleotide Sequence:NM_001285785.2Link to Protein Sequence:NP_001272714.1Re-query CCDS DB by Nucleotide ID:NM_001285785Re-query CCDS DB by Protein ID:NP_001272714Link to BLAST:NP_001272714.1

Chromosomal Locations for CCDS 88101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127322116 127322431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127322694 127322890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127325119 127325199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127325523 127325630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127325844 127325902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326048 127326141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326332 127326427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326553 127326651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326873 127327014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327095 127327205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327638 127327736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327899 127327976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328094 127328147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328390 127328524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328878 127328983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127329499 127329670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTTCTCAGGCCGGTGGTGGCCAAGTATCTGGGGAAATCTAGGGCTGAGTCTACAAAGCCCTTCTCAGG
GACCCCAGCTCTGCGCCCTCTATCCGTTCACTTACACTGGGGCAGATGGCCGGCAGGTGTCTCTGGCTGA
AGGTGACAGGTTCCTACTGCTTCGAAAGACCAACTCAGACTGGTGGCTGGCGAGGCGTCTGGGCGCACCC
CCCAGCTCTCGGCCCATCTTTGTTCCAGCTGCATACATGACAGAGGAATCAATCTGCTGCCACAACCCAG
CAGACACTACCTACAACAGCTCCCTCTGGACTCCTGGGACAAAGCTGTATCATGGCTCCCTGGAGGAGCT
CTATCTGCCTCAGGAACCCCAGGTTGCTTCTGGGCAGCCTCTTCACCATCCCCACAAGATGTGCAAAAGT
GTCAGCACGGGCAATGTGAAGGCCTGCTCCCTGAAATCCTTCAAGGAAGGGCCAGGAGAAAGGTCTCACT
GGTGGATGACAGAAGTTGCTGTGAAACCGGGCTCCATGGAGCAGACAGAGACTTTGACTAGGGACAGCAG
TGCCCTACAGCCTCAGGAATGGCTCGATCCACAGGGTTTACCAAGCCTCAGCCAAAGCGTCCCATGGCTT
GCTCTCTCTGAACAGCCGGGAGCCTTGAGGCCCTGTTCAGCTCTGCCACAGCTCCTGGATGACCCCCACG
TGGAAGAAAGGTCAGGCCTGCTCAACATGACCAAGATTGCTCAAGGAGGGCGCAAACTCAGGAAGAACTG
GGGCCCTGCTTGGGTGGTGTTAACTGGTAGCAGCCTTGTGTTTTACCGAGAGCGGCCACCGCAGTCTGCA
TCCCTCCAAGGCTGGGCGCGGGCTGGGAGCCGGCCGGAGAGTAGCGTGGACCTGCGCGGGGCGGCCCTGG
CCAGCGGGCGCCAGCTGTCCAGCCGCCGGAACGTCCTGCACATCCGCACGGTCCCGGGACATGAGTTCCT
GCTGCAGTCGGACGAGGAGACCGAGCTGCGAGACTGGCACCGCGCGCTGCGGACTGTCATCGAGCGGCTG
GATCGGGAGAACCCCCTGGAGCTGCGTCTGTCGGGCTCCGGACCCGCCGAGCTGGCCGAGCTGAGCGCTG
GTGAGGATGACGAATTGGAATCGGAACCGGTGTCCAAGTCCCTGATGCGGCTTGGCAGCCGCAGAACTTC
CAGTCGGTGTGCAGAGGGCACTGACCAGAAGAACCGCGTGCGGAACAAGTTAAAGCGGCTAATCGCCAAG
AGACCAACCTTGCAGAGCCTACAAGAGCGGGGTCTGTTCCGAGACCAGGTTTTTGGCTGCCAGTTGGAGT
CGCTGTGCCAACGGGAAGGGGACACCGTGCCCAGCTTTGTCCGGCTTTGTGTTGAGGCCGTGGATAAAAA
AGGTCTAGACGTGGATGGTATTTACCGGGTGAGTGGGAACCTGGCCGTGGTCCAGAAACTCCGCTTCCTG
GTAGACAGAGAACGGGCAGTGACCTCTGATGGGAGATACATGTTCCCAGAACAGGCAGGACAAGAAGGCA
AATTAGATTTAGACAGTGCCGAATGGGATGATATTCACGTGGTCACCGGAGCTTTGAAGCTTTTTTTCCG
GGAGCTGCCACAGCCTCTGGTGCCTGCATTGTTGCTGCCTGACTTTCGTGATGCCCTTGAACTTTCTGAG
CCAGAGCAGTGCCTCTCCAAAATCCAGAAATTAATAGACTCGCTGCCGAGGCCCAACCATGACACTCTGA
AGTACATCCTGGAGCATCTGTGCAGGGTGATAGCACACTCGGATAAGAACCGAATGACCGCCCACAACCT
GGGAATTGTGTTTGGACCGACACTGTTTCGACCTGAGCAGGAGGCCTCTGACATGGCGGCCCACGTATTC
TACCCCGGGCAGCTGGTCCAGTTGATGCTCAACAACTTTGCCAGCCTCTTCACTTGA

Translation (648 aa):
MFSGRWWPSIWGNLGLSLQSPSQGPQLCALYPFTYTGADGRQVSLAEGDRFLLLRKTNSDWWLARRLGAP
PSSRPIFVPAAYMTEESICCHNPADTTYNSSLWTPGTKLYHGSLEELYLPQEPQVASGQPLHHPHKMCKS
VSTGNVKACSLKSFKEGPGERSHWWMTEVAVKPGSMEQTETLTRDSSALQPQEWLDPQGLPSLSQSVPWL
ALSEQPGALRPCSALPQLLDDPHVEERSGLLNMTKIAQGGRKLRKNWGPAWVVLTGSSLVFYRERPPQSA
SLQGWARAGSRPESSVDLRGAALASGRQLSSRRNVLHIRTVPGHEFLLQSDEETELRDWHRALRTVIERL
DRENPLELRLSGSGPAELAELSAGEDDELESEPVSKSLMRLGSRRTSSRCAEGTDQKNRVRNKLKRLIAK
RPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFL
VDRERAVTSDGRYMFPEQAGQEGKLDLDSAEWDDIHVVTGALKLFFRELPQPLVPALLLPDFRDALELSE
PEQCLSKIQKLIDSLPRPNHDTLKYILEHLCRVIAHSDKNRMTAHNLGIVFGPTLFRPEQEASDMAAHVF
YPGQLVQLMLNNFASLFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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