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Report for CCDS88010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88010.1 Public Mus musculus 10 Dnajb12 23 108 98 CCDS HistoryNCBI Gene:56709Re-query CCDS DB by CCDS ID:88010.1Re-query CCDS DB by GeneID:56709See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147914.7 ENSMUSP00000116577.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147914.7Link to Ensembl Protein Viewer:ENSMUSP00000116577.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147914Re-query CCDS DB by Protein ID:ENSMUSP00000116577
Current member NCBI NM_001374756.1 NP_001361685.1 Accepted alive Link to Nucleotide Sequence:NM_001374756.1Link to Protein Sequence:NP_001361685.1Re-query CCDS DB by Nucleotide ID:NM_001374756Re-query CCDS DB by Protein ID:NP_001361685Link to BLAST:NP_001361685.1

Chromosomal Locations for CCDS 88010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59879678 59879810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59890028 59890208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59890840 59890985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59892672 59892857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59892938 59893017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59894231 59894340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59895588 59895760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59896350 59896447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59897491 59897520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGAATCCAACAAGGATGAAGCCGAGCGCTGTATCAGCATCGCCCTCAAGGCCATCCAAAGCAACCAGC
CCGAGCGGGCGCTGCGCTTCCTGGAGAAGGCGCAGCGGCTCTACCCGACGCCACGAGTCAGCGCACTGAT
CGAGTCCCTCAACCAAAAACCACAGTCCACCGGTGATCACCCTCAACCCACAGACACTACCCATACCACC
ACCAAGAAGGCAGGCGGGACCGAAACCCCCTCAGCCAACGGCGAGGCAGGAGGAGGGGAGAGCGCCAAGG
GCTATACCTCAGAGCAGGTGGCAGCTGTGAAAAGGGTCAAGCAGTGTAAAGATTACTATGAGATCCTTGG
GGTAAGCAGAAGTGCCTCAGATGAGGACCTAAAGAAGGCCTACCGCAAGCTGGCCCTCAAGTTCCATCCA
GACAAGAACCATGCGCCTGGGGCCACTGAAGCTTTCAAAGCCATTGGCACAGCGTATGCCGTACTCAGCA
ACCCAGAGAAAAGGAAACAGTACGACCAGTTTGGTGATGACAAGAGCCAGGCTGCCCGGCACGGCCACAG
CCACGGGGACTTCCACCGAGGCTTTGAGGCTGACATCTCCCCAGAAGACCTCTTTAACATGTTCTTTGGT
GGCGGCTTTCCTTCCAGTAACGTTCATGTCTACAGCAATGGCCGAATGCGGTACACCTACCAGCAGAGGC
AAGACCGCAGAGACAACCAGGGTGATGGCGGGCTAGGAGTGTTCGTGCAGCTGATGCCCATCCTCATCCT
CATCCTCGTGTCTGCGCTCAGCCAGCTCATGGTGTCCAGTCCTCCCTACAGCCTGAGCCCGAGACCGTCA
GTGGGCCACATCCACAAGCGAGTCACTGACCACCTGAACGTCGCCTACTACGTGGCAGACACCTTCTCCG
AAGAGTACACGGGCTCCAGCCTCAAAACAGTGGAACGGAATGTAGAGGATGACTACATCGCCAACCTGCG
CAACAACTGCTGGAAGGAGAAGCAGCAGAAGGAAGGCTTGCTGTACCGAGCCCGCTACTTTGGTGACACA
GACATGTACCACAGAGCACAGAAGATGGGCACCCCGAGTTGCAATCGGCTGTCAGAGACTATGAAATCCC
TGGAGAATTTTTGGTGA

Translation (378 aa):
MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYPTPRVSALIESLNQKPQSTGDHPQPTDTTHTT
TKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHP
DKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFG
GGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPILILILVSALSQLMVSSPPYSLSPRPS
VGHIHKRVTDHLNVAYYVADTFSEEYTGSSLKTVERNVEDDYIANLRNNCWKEKQQKEGLLYRARYFGDT
DMYHRAQKMGTPSCNRLSETMKSLENFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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