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Report for CCDS87987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87987.1 Public Mus musculus 10 Zup1 23 108 98 CCDS HistoryNCBI Gene:72580Re-query CCDS DB by CCDS ID:87987.1Re-query CCDS DB by GeneID:72580See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218055.1 ENSMUSP00000151811.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218055.1Link to Ensembl Protein Viewer:ENSMUSP00000151811.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218055Re-query CCDS DB by Protein ID:ENSMUSP00000151811
Original member Current member NCBI NM_001359455.1 NP_001346384.1 Accepted alive Link to Nucleotide Sequence:NM_001359455.1Link to Protein Sequence:NP_001346384.1Re-query CCDS DB by Nucleotide ID:NM_001359455Re-query CCDS DB by Protein ID:NP_001346384Link to BLAST:NP_001346384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346384.1 577 Q3T9Z9-1 577 100% 0 0

Chromosomal Locations for CCDS 87987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 33919328 33919375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33927401 33927621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33928012 33928163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33929821 33929986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33930156 33930344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33935089 33935257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33940158 33940279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33943650 33943760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33948929 33949484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGCTTTCCTGCAACATATGTGGTGAAACTGTAAACTCAGAACCAGATATGAAAGCTCACCTAATTGTTC
ACATGGAAAATGAAATTATCTGTCCATTTTGCAAGTTGTCAGGTATAAATTACAACGAAATATGTTTTCA
TATCGAAACTGTTCATTTTGAACAAAATGCACCAGAAAAAAACTCTGAGAAGCTAGCTGCAGTGCAATAT
GGACATTCAGACCGAAAGAACACCAACCTGCAGAGTACAGCGGAAGTTACTTCAGGCATTCATTCAGCTT
GTGCATCTAGCTTTCCAAAAGAGTCATCTGAAAGCCTTCCTAAAGATAGGACTGTAAAGCATGAAGCTTT
TTATACAGAGAACATAACTGAATCTAGAAAGTACCAAAAGAGCAGAGAAAAGAAGCCTGGATTGTCTGAG
GCCCAAGGATCAATTTATGAAACAACATACAGTCCTCCCGAATGTCCATTTTGTGGAAAAATTGAGGGGT
GTAGTCAAGATATGGAAATTCATGTGAAAACAAAGCATGCCAGTCTTTTAGAAAGTCCATTAAAAGACTG
TCATCAACCACTCTATGACTGTCCCATGTGTGGGCTTGTCTGTACAAATTACCATATTCTCCAGGAACAT
GTGGACTTGCATTTAGAAGAAAGCAGCTTTCAGCAAGGCATGGACAGAGTCCAGTGTTCTAGTGATAGAG
AATTAGCTCACCGGCTTCAGCAAGAAGAAGACAGAAAGAGGAAATCTGAAGAATCAAGACAAGAAAGGGA
AGAGTTTCAGAAGTTGCAGCGGCAATATGGTTTAGATAATTCTGGAGGATACAAACAACAGCAGCTACGA
CATATGGAGCTAGAAGTAAATAGGGGAAGAATGCATCCATCTGAATTTCATAGCAGAAAAGCTGACATGT
TGGAATCAATAGCTATTGGTATTGATGATGGAAAAACAAAAACTTCTGGAATTATTGAAGCCCTCCATAG
GTATTATCAGAACACTGCCACAGATGTAAGGTGTGTGTGGCTTTCTACAGTGGTGGATCACTTTCACTCA
TCTTTTGGGGACAAAGGTTGGGGTTGCGGTTATAGAAACTTCCAGATGCTACTTTCATCATTATTGCAAA
GTGATGTATATGGTGACTGCTTGAAAGGTATGGCAGTTCCTTGTATTCCAAAAATTCAGTCCATGATTGA
AGATGCATGGAATGAAGGTTTTGATCCTCAGGGAGCCTCTCAACTTAATAACAAATTACAGGGAACAAAG
GCCTGGATTGGAGCGTGTGAGATTTATACACTTCTGACCTCACTGAGAGTAAAGTGCCGCATTATTGATT
TTCACAAGTCAACTGGTCCTTTGGGTACACACCCTCGCTTATTTGAATGGATATTGAACTATTATTCTTC
AGAGACGGAAGGAACTCCAAAGATCGTGTGTACATCTAAACCTCCTATCTATCTCCAGCATCAGGGTCAC
AGTCGAACAGTTGTTGGAATTGAAGAGAAAAAAAACCGAACATTATGCTTGCTAGTATTTGATCCTGGAT
GTCCTTCTCGAGAAATGCAGAAACTGTTAAAGCAAGATATGGAGGCTAGTAGTCTTAGACAACTTCGGAA
ATCTGTGGGAAATCTAAAACATAAGCAGTACCAGATAGTAGCAGTAGAGGGTGTTCTTTCCCCAGAGGAA
AAAGTTGCCAGGAAACAAGCTTCGCAAGTGTTTACAGCGGAGAAGATTCCTTGA

Translation (577 aa):
MLSCNICGETVNSEPDMKAHLIVHMENEIICPFCKLSGINYNEICFHIETVHFEQNAPEKNSEKLAAVQY
GHSDRKNTNLQSTAEVTSGIHSACASSFPKESSESLPKDRTVKHEAFYTENITESRKYQKSREKKPGLSE
AQGSIYETTYSPPECPFCGKIEGCSQDMEIHVKTKHASLLESPLKDCHQPLYDCPMCGLVCTNYHILQEH
VDLHLEESSFQQGMDRVQCSSDRELAHRLQQEEDRKRKSEESRQEREEFQKLQRQYGLDNSGGYKQQQLR
HMELEVNRGRMHPSEFHSRKADMLESIAIGIDDGKTKTSGIIEALHRYYQNTATDVRCVWLSTVVDHFHS
SFGDKGWGCGYRNFQMLLSSLLQSDVYGDCLKGMAVPCIPKIQSMIEDAWNEGFDPQGASQLNNKLQGTK
AWIGACEIYTLLTSLRVKCRIIDFHKSTGPLGTHPRLFEWILNYYSSETEGTPKIVCTSKPPIYLQHQGH
SRTVVGIEEKKNRTLCLLVFDPGCPSREMQKLLKQDMEASSLRQLRKSVGNLKHKQYQIVAVEGVLSPEE
KVARKQASQVFTAEKIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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