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Report for CCDS87985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87985.1 Public Mus musculus 10 Trdn 23 108 98 CCDS HistoryNCBI Gene:76757Re-query CCDS DB by CCDS ID:87985.1Re-query CCDS DB by GeneID:76757See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217779.1 ENSMUSP00000151583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217779.1Link to Ensembl Protein Viewer:ENSMUSP00000151583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217779Re-query CCDS DB by Protein ID:ENSMUSP00000151583
Original member Current member NCBI NM_001364697.1 NP_001351626.1 Accepted alive Link to Nucleotide Sequence:NM_001364697.1Link to Protein Sequence:NP_001351626.1Re-query CCDS DB by Nucleotide ID:NM_001364697Re-query CCDS DB by Protein ID:NP_001351626Link to BLAST:NP_001351626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351626.1 293 E9Q9K5-3 293 100% 0 0

Chromosomal Locations for CCDS 87985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 33083724 33083745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33139074 33139283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33157013 33157174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33158246 33158278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33175769 33175828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33183954 33184016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33186641 33186700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33195949 33196125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33200163 33200257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGACTGAGATCACTGCTGAAGGAAATGCATCGACAACCACAACGGTGATAGACAACAAAAATGGATGTA
TTCCTAAATCCCCTGGAAAGGTGCTGAAGAGGTCTGTCACCGAAGACATTGTGACAACATTCAGCTCCCC
TGCAGCCTGGCTTCTTGTCATCGCTCTGATTATCACATGGTCAGCTGTTGCTATCGTGATGTTTGATTTA
GTGGATTATAAAAACTTTTCAGCAAGCTCCATTGCCAAGATTGGCTCAGATCCTCTAAAACTAGTGAATG
ATGCTGTGGAGGAGACAACAGACTGGATCTATGGCTTCTTCTCTTTGCTATCTGACATCATCTCATCTGA
AGGTGACGAAGATGATGAGGATGCAGATGAAGACATTGATAAAGGAGAAATAGAAGAACCTCCCTTAAAA
AGAAAAGAAATACACCAAGAAAAGGCTGAAAAAGAGGAGAAACCTGAGAAGAAAATACAAACTAAAGCTT
CACACAGAGAAAGGGAGAAAGGAAAAGAAAAATTAAAAGGAGAAAAACCTGAGAAGACAGCAACTCACAA
AGAGAAACTTGAGAAAAAAGAAAGACCAGAGACGAAGATGATGGCAAAAGAGGACAAGAAAATTAAGACT
AAGGAAAAGACTGAAGAAAAGGCTAAGAAGGAAATGAAAGTTGGAAAACAGGAGAAAGTGAAACCAACAG
CTGCAAAAGCCAAAGAAACTCCGAAAACACCACCAAAGGCCAGAAAGAAGGATGACAAAGAGATGCCAGC
TGTGCATGAGCAGAAAGATCAGTATGCATTCTGTCGATATATGATTGACATGTTTGTCCATGGGGATTTA
AAACCAGGTATTCCAAACAATTCTTATTGTTGTCTGTCTTAA

Translation (293 aa):
MTEITAEGNASTTTTVIDNKNGCIPKSPGKVLKRSVTEDIVTTFSSPAAWLLVIALIITWSAVAIVMFDL
VDYKNFSASSIAKIGSDPLKLVNDAVEETTDWIYGFFSLLSDIISSEGDEDDEDADEDIDKGEIEEPPLK
RKEIHQEKAEKEEKPEKKIQTKASHREREKGKEKLKGEKPEKTATHKEKLEKKERPETKMMAKEDKKIKT
KEKTEEKAKKEMKVGKQEKVKPTAAKAKETPKTPPKARKKDDKEMPAVHEQKDQYAFCRYMIDMFVHGDL
KPGIPNNSYCCLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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