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Report for CCDS87976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87976.1 Public Mus musculus 10 Ptprk 23 108 98 CCDS HistoryNCBI Gene:19272Re-query CCDS DB by CCDS ID:87976.1Re-query CCDS DB by GeneID:19272See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218359.1 ENSMUSP00000151986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218359.1Link to Ensembl Protein Viewer:ENSMUSP00000151986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218359Re-query CCDS DB by Protein ID:ENSMUSP00000151986
Original member NCBI NM_001359356.1 NP_001346285.1 Updated not alive Link to Nucleotide Sequence:NM_001359356.1Link to Protein Sequence:NP_001346285.1Re-query CCDS DB by Nucleotide ID:NM_001359356Re-query CCDS DB by Protein ID:NP_001346285
Current member NCBI NM_001359356.2 NP_001346285.1 Accepted alive Link to Nucleotide Sequence:NM_001359356.2Link to Protein Sequence:NP_001346285.1Re-query CCDS DB by Nucleotide ID:NM_001359356Re-query CCDS DB by Protein ID:NP_001346285Link to BLAST:NP_001346285.1

Chromosomal Locations for CCDS 87976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 28075081 28075177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28206134 28206256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28263501 28263772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28334476 28334557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28336422 28336537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28354605 28354779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28383431 28383724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28465758 28466060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28472948 28473057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28475085 28475286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28483188 28483293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28492914 28493187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28496909 28496945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28551618 28551756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28560005 28560165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28566495 28566679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28568327 28568414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28569897 28569973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28570174 28570191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28573368 28573404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28574819 28574916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28575590 28575706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28580393 28580547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28585560 28585695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28585923 28586072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28586908 28587081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28588928 28589059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28589259 28589384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28591885 28592048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28592770 28592905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28595802 28595855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4338 nt):
ATGGATGTGGCGGCCGCTGCGTTGCCTGCTTTTGTAGCTCTCTGGCTTCTGTACCCGTGGCCTCTCCTGG
GGTCGGCCCTTGGCCAGTTCTCAGCAGGTGGCTGTACTTTTGATGATGGGCCAGGGGCTTGTGACTACCA
CCAGGATTTATACGATGACTTTGAGTGGGTCCATGTCAGTGCGCAGGAACCTCATTACCTGCCCCCCGAA
ATGCCTCAAGGTTCCTATATGGTTGTGGACTCCTCAAATCATGATCCTGGAGAAAAAGCCAGACTTCAGC
TGCCTACCATGAAGGAGAATGACACCCACTGCATTGATTTCAGTTACCTGTTATATAGCCAGAAGGGGTT
GAACCCTGGCACTTTGAATATCCTAGTTAGGGTGAATAAAGGACCTCTTGCTAATCCAATTTGGAATGTA
ACTGGATTCACTGGTCGTGATTGGCTTCGGGCTGAACTAGCTGTGAGCACCTTTTGGCCCAATGAATACC
AGGTAATATTTGAAGCTGAAGTCTCAGGAGGGAGAAGTGGTTATATTGCCATTGATGACATCCAAGTCCT
GAGTTATCCTTGCGATAAATCTCCTCATTTTCTCCGCCTTGGTGATGTGGAGGTCAATGCTGGGCAGAAT
GCTACATTTCAGTGCATTGCTACAGGGAGAGATGCTGTGCATAACAAGTTATGGCTGCAGAGACGCAATG
GAGAAGACATACCCGTAGCCCAGACTAAGAACATAAATCACAGAAGATTTGCTGCCTCTTTCAGATTGCA
AGAAGTGACAAAAACTGACCAGGATTTGTACCGCTGCGTAACTCAGTCAGAACGAGGTTCTGGGGTTTCC
AATTTTGCTCAACTCATTGTGAGAGAACCACCTAGACCCATTGCTCCTCCCCAGCTGCTTGGTGTTGGGC
CTACTTACTTGCTGATCCAACTAAATGCCAACTCTATTATTGGCGATGGCCCCATCATCCTGAAAGAAGT
AGAGTATCGAATGACATCAGGATCTTGGACAGAAACCCATGCAGTCAACGCACCAACATATAAGTTGTGG
CATTTAGACCCAGATACAGAATACGAGATCCGCGTCCTGCTTACCAGACCTGGCGAAGGGGGAACTGGGC
TGCCAGGACCACCACTGATCACTAGAACGAAGTGTGCAGAACCTATGCGGACACCAAAGACTTTAAAGAT
TGCTGAAATCCAGGCAAGGCGCATTGCAGTGGACTGGGAGTCCTTGGGCTACAACATCACTCGTTGCCAC
ACTTTCAACGTCACTATCTGCTACCATTACTTCCGTGGCCACAATGAGAGCAGGGCAGACTGCTTGGACA
TGGACCCCAAAGCCCCTCAGCATGTTGTGAACCATCTGCCACCTTACACAAATGTCAGCCTCAAGATGAT
CCTAACCAACCCAGAGGGAAGGAAGGAGAGCGAAGAGACAATCATCCAAACTGATGAAGATGTGCCCGGG
CCTGTGCCAGTCAAATCCCTCCAAGGAACATCCTTTGAAAACAAGATCTTCCTGAACTGGAAAGAGCCAC
TGGAACCGAATGGAATTATCACTCAGTATGAGGTGAGCTATAGCAGCATAAGATCATTTGACCCTGCTGT
TCCAGTGGCTGGGCCCCCACAGACTGTATCAAATTTATGGAATAGTACACACCATGTATTTATGCATCTT
CACCCTGGAACCACCTACCAGTTTTTTATAAGAGCCAGCACTGTCAAAGGCTTTGGACCAGCAACAGCCA
TCAATGTGACCACAAATATCTCAGCTCCAAGCTTACCTGACTATGAAGGAGTTGATGCCTCTCTGAATGA
AACTGCCACCACCATCACAGTACTATTGAGGCCTGCACAAGCCAAAGGTGCTCCTATCAGTGCTTATCAA
ATTGTTGTGGAGCAGCTACACCCACATCGAACGAAGCGTGAAGCAGGGGCCATGGAATGCTACCAGGTAC
CGGTTACATACCAGAACGCCCTAAGTGGGGGCGCGCCCTATTACTTTGCCGCAGAACTTCCCCCTGGGAA
TCTTCCCGAGCCTGCTCCCTTCACCGTGGGTGACAACCGGACCTATAAAGGCTTTTGGAACCCTCCCCTG
GCCCCCCGCAAAGGATACAACATCTATTTCCAAGCGATGAGCAGTGTGGAGAAGGAAACTAAAACCCAAT
GTGTACGAATTGCTACAAAAGCAGCAGCAACAGAAGAACCAGAAGTGATCCCAGACCCGGCAAAGCAGAC
AGACAGAGTGGTGAAAATCGCGGGCATCAGTGCTGGCATCCTAGTGTTCATCCTTCTCCTGCTGGTTGTC
ATAGTAATTGTGAAAAAGAGCAAGCTTGCTAAGAAGCGCAAAGATGCAATGGGGAACACACGTCAGGAGA
TGACCCACATGGTGAATGCTATGGACCGAAGTTATGCTGACCAGAGCACCCTGCATGCAGAAGACCCCCT
TTCCCTCACCTTCATGGACCAACATAACTTCAGTCCAAGATATGAGAACCACAGTGCCACAGCAGAGTCT
AGTCGTCTCCTGGATGTTCCTCGATACCTCTGTGAAGGGACAGAGTCCCCTTATCAGACAGGACAGCTGC
ACCCAGCCATCAGGGTGGCCGACTTACTGCAGCACATTAACCTCATGAAGACATCAGACAGCTATGGGTT
CAAAGAGGAATACGAGAGCTTCTTTGAAGGCCAGTCAGCCTCTTGGGATGTGGCTAAAAAGGATCAAAAC
AGAGCAAAGAACCGATACGGAAACATTATCGCATATGATCACTCCAGAGTCATCCTGCAACCTGTGGAAG
ATGACCCTTCTTCAGATTACATTAATGCCAACTACATCGACATTTGGCTGTACAGGGATGGCTACCAGAG
ACCAAGCCACTACATTGCAACTCAAGGCCCAGTTCATGAAACCGTATATGATTTTTGGAGGATGGTGTGG
CAAGAGCAGTCTGCCTGTATTGTGATGGTCACTAATTTAGTGGAAGTTGGCCGGGTGAAATGCTATAAAT
ATTGGCCTGATGATACTGAGGTTTATGGTGACTTCAAAGTCACCTGCGTAGAAATGGAGCCACTTGCTGA
GTATGTCGTTAGGACATTCACCTTGGAAAGGAGGGGCTATAATGAAATCCGTGAAGTCAAACAGTTCCAC
TTCACTGGCTGGCCTGACCATGGTGTTCCATACCACGCAACAGGGCTCCTGTCATTTATCCGGAGAGTCA
AGCTATCTAACCCTCCCAGTGCTGGGCCCATTGTCGTACACTGCAGTGCTGGTGCTGGGCGCACAGGCTG
TTACATTGTTATTGACATAATGCTGGACATGGCTGAAAGAGAGGGTGTGGTTGACATCTACAACTGTGTG
AAAGCCTTACGATCTCGGCGCATTAATATGGTACAGACAGAGGAACAGTACATTTTTATTCATGATGCCA
TTTTAGAAGCCTGCTTATGTGGAGAAACTGCCATCCCTGTGTGTGAATTTAAAGCTGCATATTTTGATAT
GATTCGAATAGACTCTCAGACTAACTCCTCTCATCTCAAAGATGAATTTCAGACTCTGAATTCGGTCACC
CCTCGACTACAAGCTGAAGACTGCAGCATAGCCTGCCTGCCAAGGAACCATGACAAGAACCGTTTCATGG
ATATGCTCCCACCTGACAGATGTCTGCCTTTTTTAATTACAATTGATGGGGAGAGCAGTAACTACATCAA
TGCTGCTCTTATGGATAGCTATAGGCAGCCAGCAGCTTTCATCGTCACACAATACCCACTGCCAAACACT
GTGAAAGACTTCTGGAGATTAGTATATGATTACGGATGTACCTCCATCGTGATGCTAAATGAAGTGGACC
TGTCTCAGGGCTGCCCACAGTACTGGCCAGAAGAAGGAATGCTGCGATATGGTCCTATCCAAGTGGAATG
TATGTCTTGTTCAATGGACTGTGATGTGATCAATCGAATTTTTAGAATATGCAACCTAACGAGACCACAG
GAGGGCTATCTGATGGTACAACAGTTCCAGTACCTAGGCTGGGCTTCTCATCGAGAAGTGCCTGGCTCCA
AACGCTCGTTTTTGAAATTGATACTGCAGGTGGAAAAATGGCAAGAGGAATGTGAAGAAGGGGAAGGCCG
GACAATCATCCACTGCTTGAATGGCGGTGGGCGCAGTGGCATGTTCTGTGCCATAGGCATTGTTGTGGAG
ATGGTGAAGCGGCAAAATGTGGTGGATGTTTTCCATGCAGTAAAGACGCTGAGGAACAGCAAGCCAAACA
TGGTGGAAGCCCCGGAGCAGTATCGTTTTTGCTATGATGTGGCGTTAGAGTACCTGGAGTCCTCATAG

Translation (1445 aa):
MDVAAAALPAFVALWLLYPWPLLGSALGQFSAGGCTFDDGPGACDYHQDLYDDFEWVHVSAQEPHYLPPE
MPQGSYMVVDSSNHDPGEKARLQLPTMKENDTHCIDFSYLLYSQKGLNPGTLNILVRVNKGPLANPIWNV
TGFTGRDWLRAELAVSTFWPNEYQVIFEAEVSGGRSGYIAIDDIQVLSYPCDKSPHFLRLGDVEVNAGQN
ATFQCIATGRDAVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQEVTKTDQDLYRCVTQSERGSGVS
NFAQLIVREPPRPIAPPQLLGVGPTYLLIQLNANSIIGDGPIILKEVEYRMTSGSWTETHAVNAPTYKLW
HLDPDTEYEIRVLLTRPGEGGTGLPGPPLITRTKCAEPMRTPKTLKIAEIQARRIAVDWESLGYNITRCH
TFNVTICYHYFRGHNESRADCLDMDPKAPQHVVNHLPPYTNVSLKMILTNPEGRKESEETIIQTDEDVPG
PVPVKSLQGTSFENKIFLNWKEPLEPNGIITQYEVSYSSIRSFDPAVPVAGPPQTVSNLWNSTHHVFMHL
HPGTTYQFFIRASTVKGFGPATAINVTTNISAPSLPDYEGVDASLNETATTITVLLRPAQAKGAPISAYQ
IVVEQLHPHRTKREAGAMECYQVPVTYQNALSGGAPYYFAAELPPGNLPEPAPFTVGDNRTYKGFWNPPL
APRKGYNIYFQAMSSVEKETKTQCVRIATKAAATEEPEVIPDPAKQTDRVVKIAGISAGILVFILLLLVV
IVIVKKSKLAKKRKDAMGNTRQEMTHMVNAMDRSYADQSTLHAEDPLSLTFMDQHNFSPRYENHSATAES
SRLLDVPRYLCEGTESPYQTGQLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQN
RAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHYIATQGPVHETVYDFWRMVW
QEQSACIVMVTNLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIREVKQFH
FTGWPDHGVPYHATGLLSFIRRVKLSNPPSAGPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCV
KALRSRRINMVQTEEQYIFIHDAILEACLCGETAIPVCEFKAAYFDMIRIDSQTNSSHLKDEFQTLNSVT
PRLQAEDCSIACLPRNHDKNRFMDMLPPDRCLPFLITIDGESSNYINAALMDSYRQPAAFIVTQYPLPNT
VKDFWRLVYDYGCTSIVMLNEVDLSQGCPQYWPEEGMLRYGPIQVECMSCSMDCDVINRIFRICNLTRPQ
EGYLMVQQFQYLGWASHREVPGSKRSFLKLILQVEKWQEECEEGEGRTIIHCLNGGGRSGMFCAIGIVVE
MVKRQNVVDVFHAVKTLRNSKPNMVEAPEQYRFCYDVALEYLESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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