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Report for CCDS87693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87693.1 Public Homo sapiens 9 PTRH1 24 110 108 CCDS HistoryNCBI Gene:138428Re-query CCDS DB by CCDS ID:87693.1Re-query CCDS DB by GeneID:138428See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87693.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423807.5 ENSP00000418219.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423807.5Link to Ensembl Protein Viewer:ENSP00000418219.1Re-query CCDS DB by Nucleotide ID:ENST00000423807Re-query CCDS DB by Protein ID:ENSP00000418219
Original member Current member NCBI NM_001345978.1 NP_001332907.1 Accepted alive Link to Nucleotide Sequence:NM_001345978.1Link to Protein Sequence:NP_001332907.1Re-query CCDS DB by Nucleotide ID:NM_001345978Re-query CCDS DB by Protein ID:NP_001332907Link to BLAST:NP_001332907.1

Chromosomal Locations for CCDS 87693.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127714150 127714282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127714603 127714702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127714975 127715194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127715544 127715639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGAGGCCGGGCGGCTTTTTGGGCGCCGGACAGCGGCTGAGTAGAGCCATGAGCCGATGTGTTTTGGAGC
CTCGCCCCCCGGGGAAGCGGTGGATGGTGGCTGGCCTGGGGAATCCCGGACTGCCCGGCACGCGACACAG
CGTGGGCATGGCGGTGCTGGGGCAGCTGGCGCGGCGGCTGGGTGTGGCGGAGAGTTGGACGCGCGACCGG
CACTGTGCCGCCGACCTCGCCCTGGCCCCGCTGGGGGATGCCCAACTGGTCCTGCTCCGGCCACGGCGGC
TTATGAACGCCAACGGGCGCAGCGTGGCCCGGGCTGCGGAGCTGTTTGGGCTGACTGCCGAGGAAGTCTA
CCTGGTGCATGATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAGTGCCAGGCAA
TGCCAAGGCTGCGGGTGGGTATCGGGCGCCCGGCGCACCCTGAGGCGGTTCAGGCCCATGTGCTGGGCTG
CTTCTCCCCTGCTGAGCAGGAGCTGCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGA

Translation (182 aa):
MRPGGFLGAGQRLSRAMSRCVLEPRPPGKRWMVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWTRDR
HCAADLALAPLGDAQLVLLRPRRLMNANGRSVARAAELFGLTAEEVYLVHDELDKPLGRLALKLGGSARQ
CQGCGWVSGARRTLRRFRPMCWAASPLLSRSCCLCCWIEPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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