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Report for CCDS87618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87618.1 Public Homo sapiens 8 DECR1 24 110 108 CCDS HistoryNCBI Gene:1666Re-query CCDS DB by CCDS ID:87618.1Re-query CCDS DB by GeneID:1666See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87618.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522161.5 ENSP00000429779.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522161.5Link to Ensembl Protein Viewer:ENSP00000429779.1Re-query CCDS DB by Nucleotide ID:ENST00000522161Re-query CCDS DB by Protein ID:ENSP00000429779
Original member Current member NCBI NM_001330575.2 NP_001317504.1 Accepted alive Link to Nucleotide Sequence:NM_001330575.2Link to Protein Sequence:NP_001317504.1Re-query CCDS DB by Nucleotide ID:NM_001330575Re-query CCDS DB by Protein ID:NP_001317504Link to BLAST:NP_001317504.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317504.1 326 Q16698-2 326 100% 0 0

Chromosomal Locations for CCDS 87618.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 90006236 90006277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90017124 90017326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90018909 90018966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90019086 90019172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90020909 90021056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90036841 90036940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90042728 90042800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90044849 90044995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90051677 90051739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90051838 90051897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTCAGGACTGGGGAAGAAGCATCTCCTGCTCATGGGGGAGTTTTTCAGTTATGGGACAAAAATATTAT
ATCAAAACACTGAAGCTTTGCAATCTAAATTCTTTTCACCTCTTCAAAAAGCGATGCTACCACCTAATAG
TTTTCAAGGAAAAGTGGCATTCATTACTGGGGGAGGTACTGGCCTTGGTAAAGGAATGACAACTCTTCTG
TCCAGCCTAGGTGCTCAGTGCGTGATAGCCAGCCGGAAGATGGATGTTTTGAAAGCTACCGCAGAACAAA
TTTCTTCTCAAACTGGAAATAAGGTTCATGCAATTCAGTGTGATGTGAGGGATCCTGATATGGTTCAAAA
CACTGTGTCAGAACTGATCAAAGTTGCAGGACATCCTAATATTGTGATAAACAATGCAGCAGGGAATTTT
ATTTCTCCTACTGAAAGACTTTCTCCTAATGCTTGGAAAACCATAACTGACATAGTTCTAAATGGCACAG
CCTTCGTGACACTAGAAATTGGAAAACAACTAATTAAAGCACAGAAAGGAGCAGCATTTCTTTCTATTAC
TACTATCTATGCTGAGACTGGTTCAGGTTTTGTAGTACCAAGTGCTTCTGCCAAAGCAGGTGTGGAAGCC
ATGAGCAAGTCTCTTGCAGCTGAATGGGGTAAATATGGAATGCGATTCAATGTGATTCAACCAGGGCCTA
TAAAAACCAAAGGTGCCTTTAGCCGTCTGGACCCAACTGGAACATTTGAGAAAGAAATGATTGGCAGAAT
TCCCTGTGGTCGCCTGGGGACTGTAGAAGAACTCGCAAATCTTGCTGCTTTCCTTTGTAGTGATTATGCT
TCTTGGATTAATGGAGCAGTCATTAAATTTGACGGTGGAGAGGAAGTACTTATTTCAGGGGAATTCAACG
ACCTGAGAAAGGTCACCAAGGAGCAGTGGGACACCATAGAAGAACTCATCAGGAAGACAAAAGGTTCCTA
A

Translation (326 aa):
MSGLGKKHLLLMGEFFSYGTKILYQNTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLL
SSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNF
ISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEA
MSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYA
SWINGAVIKFDGGEEVLISGEFNDLRKVTKEQWDTIEELIRKTKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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