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Report for CCDS87608.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
87608.1 |
Public |
Homo sapiens |
8 |
SNTG1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54212](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:87608.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:54212](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 87608.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000647273.1 |
ENSP00000494713.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000647273.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000494713.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000647273](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000494713](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001321775.2 |
NP_001308704.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001321775.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001308704.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001321775](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001308704](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001308704.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001321776.2 |
NP_001308705.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001321776.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001308705.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001321776](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001308705](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001308705.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001321777.2 |
NP_001308706.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001321777.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001308706.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001321777](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001308706](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001308706.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001321778.2 |
NP_001308707.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001321778.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001308707.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001321778](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001308707](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001308707.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 87608.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1308 nt): ATGGATTTCAGAACCGCCTGTGAGGAGACAAAGACAGGAATTTGTTTGCTGCAGGATGGTAACCAGGAGC CTTTCAAAGTGCGGCTGCACCTAGCCAAAGACATTTTGATGATCCAGGAACAGGATGTGATATGTGTGTC TGGTGAGCCTTTCTATTCTGGTGAAAGAACGGTGACCATCAGAAGACAAACAGTAGGAGGATTTGGATTA AGCATAAAGGGAGGAGCAGAACATAACATTCCAGTTGTCGTTTCAAAAATCTCCAAGGAACAAAGAGCGG AACTTTCAGGACTACTTTTTATTGGAGATGCAATTCTACAGATAAATGGCATTAATGTGAGAAAATGTAG ACATGAAGAAGTGGTTCAGGTTCTTCGGAATGCTGGAGAAGAAGTGACTCTAACAGTGTCATTTTTAAAA AGAGCACCTGCTTTCCTCAAACTCCCATTGAATGAAGATTGTGCATGTGCTCCAAGTGACCAGAGCAGTG GCACCTCCTCTCCTCTCTGTGACAGTGGCTTACATCTCAACTACCATCCCAACAATACAGACACATTATC ATGCTCGTCGTGGCCGACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCTCAGACTGATCCCT CTACTTCATTCGCGCTTCTCTCAGTATGTGCCCGGCACAGATTTGAGTCGGCAGAATGCCTTTCAAGTCA TTGCTGTGGATGGGGTCTGCACTGGGATTATTCAGTGCCTCTCTGCTGAAGACTGCGTTGACTGGCTACA AGCAATAGCAACTAACATTTCAAATCTCACAAAGCACAATATTAAAAAAATCAACAGAAACTTTCCTGTA AACCAGCAGATTGTCTACATGGGCTGGTGTGAAGCCCGGGAGCAAGACCCCCTCCAGGACAGAGTGTACT CCCCGACCTTCCTGGCCCTGAGGGGCTCATGTCTCTACAAGTTTCTGGCACCTCCAGTGACCACCTGGGA CTGGACGAGAGCAGAGAAAACATTCTCAGTTTATGAGATTATGTGCAAGATCCTCAAGGACAGTGACCTG CTGGACCGACGGAAACAGTGCTTCACCGTGCAGTCTGAGTCTGGGGAGGACCTGTACTTCTCAGTGGAGC TGGAAAGTGACCTCGCCCAGTGGGAAAGAGCCTTCCAGACAGCAACCTTTCTAGAAGTAGAACGGATACA GTGCAAGACCTATGCATGTGTGCTAGAAAGTCATCTAATGGGACTCACAATTGATTTCAGCACAGGATTT ATCTGCTTTGATGCTGCAACAAAGGTAATGTGTTCAGGTCAGCTCTGA
Translation (435 aa): MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTIRRQTVGGFGL SIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLK RAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIP LLHSRFSQYVPGTDLSRQNAFQVIAVDGVCTGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPV NQQIVYMGWCEAREQDPLQDRVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDL LDRRKQCFTVQSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF ICFDAATKVMCSGQL
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