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Report for CCDS87538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87538.1 Public Homo sapiens 7 EFCAB10 24 110 108 CCDS HistoryNCBI Gene:100130771Re-query CCDS DB by CCDS ID:87538.1Re-query CCDS DB by GeneID:100130771See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485614.5 ENSP00000417841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485614.5Link to Ensembl Protein Viewer:ENSP00000417841.1Re-query CCDS DB by Nucleotide ID:ENST00000485614Re-query CCDS DB by Protein ID:ENSP00000417841
Original member Current member NCBI NM_001355530.2 NP_001342459.1 Accepted alive Link to Nucleotide Sequence:NM_001355530.2Link to Protein Sequence:NP_001342459.1Re-query CCDS DB by Nucleotide ID:NM_001355530Re-query CCDS DB by Protein ID:NP_001342459Link to BLAST:NP_001342459.1

Chromosomal Locations for CCDS 87538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105565549 105565615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105567467 105567490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105569203 105569290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105569407 105569571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105581358 105581463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGAGACCAGCAGCAGGGAGCTCCAAGCCGCGGAGTATTTGGAAAAGCATCAGATCAAGGAGGTGGTTA
GCTACCTCACCAGCGCCCTCCTTTTCTTTCGGCCGGAAAAACCAAAAGAATATTTAATATCTCTATTGGA
ACGACTGAGAATTGCAAAAGTAACAGGCGTGGCGTTTCCTTTCTTTATGGATAACTCTAACATTGTGGCT
ATGTTTGAGATGATGGACTCCTCAGGCAGAGGCACCATATCATTTGTGCAGTATAAAGAAGCCCTAAAAA
CCCTGGGTCTATGCACTGAAGATGAAGATTTACAAGATGATGGACATAAAATAACTTTGGATAAATTCAA
GGAGGAAGTGAACAAGAGGATGAAGGAAATATGTGAGAAAACAAAGGGAAAAGATTCCGAGTCATATCAA
ACTGCAGCTGGGCTGCTCCTCCTTCATTGA

Translation (149 aa):
METSSRELQAAEYLEKHQIKEVVSYLTSALLFFRPEKPKEYLISLLERLRIAKVTGVAFPFFMDNSNIVA
MFEMMDSSGRGTISFVQYKEALKTLGLCTEDEDLQDDGHKITLDKFKEEVNKRMKEICEKTKGKDSESYQ
TAAGLLLLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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