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Report for CCDS87476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87476.1 Public Homo sapiens 7 AIMP2 24 110 108 CCDS HistoryNCBI Gene:7965Re-query CCDS DB by CCDS ID:87476.1Re-query CCDS DB by GeneID:7965See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400479.6 ENSP00000383327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400479.6Link to Ensembl Protein Viewer:ENSP00000383327.2Re-query CCDS DB by Nucleotide ID:ENST00000400479Re-query CCDS DB by Protein ID:ENSP00000383327
Original member Current member NCBI NM_001326609.2 NP_001313538.1 Accepted alive Link to Nucleotide Sequence:NM_001326609.2Link to Protein Sequence:NP_001313538.1Re-query CCDS DB by Nucleotide ID:NM_001326609Re-query CCDS DB by Protein ID:NP_001313538Link to BLAST:NP_001313538.1
Original member Current member NCBI NM_001326610.2 NP_001313539.1 Accepted alive Link to Nucleotide Sequence:NM_001326610.2Link to Protein Sequence:NP_001313539.1Re-query CCDS DB by Nucleotide ID:NM_001326610Re-query CCDS DB by Protein ID:NP_001313539Link to BLAST:NP_001313539.1
Original member Current member NCBI NM_001326611.3 NP_001313540.1 Accepted alive Link to Nucleotide Sequence:NM_001326611.3Link to Protein Sequence:NP_001313540.1Re-query CCDS DB by Nucleotide ID:NM_001326611Re-query CCDS DB by Protein ID:NP_001313540Link to BLAST:NP_001313540.1

Chromosomal Locations for CCDS 87476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6015245 6015352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6017814 6018045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6023303 6023691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGATTCAAACACCAGATGCAGACTTGGATGTAACCAACATAATCCAAGCGGATGAGCCCACGACTTTAA
CCACCAATGCGCTGGACTTGAATTCAGTGCTTGGGAAGGATTACGGGGCGCTGAAAGACATCGTGATCAA
CGCAAACCCGGCCTCCCCTCCCCTCTCCCTGCTTGTGCTGCACAGGCTGCTCTGTGAGCACTTCAGGGTC
CTGTCCACGGTGCACACGCACTCCTCGGTCAAGAGCGTGCCTGAAAACCTTCTCAAGTGCTTTGGAGAAC
AGAATAAAAAACAGCCCCGCCAAGACTATCAGCTGGGATTCACTTTAATTTGGAAGAATGTGCCGAAGAC
GCAGATGAAATTCAGCATCCAGACGATGTGCCCCATCGAAGGCGAAGGGAACATTGCACGTTTCTTGTTC
TCTCTGTTTGGCCAGAAGCATAATGCTGTCAACGCAACCCTTATAGATAGCTGGGTAGATATTGCGATTT
TTCAGTTAAAAGAGGGAAGCAGTAAAGAAAAAGCCGCTGTTTTCCGCTCCATGAACTCTGCTCTTGGGAA
GAGCCCTTGGCTCGCTGGGAATGAACTCACCGTAGCAGACGTGGTGCTGTGGTCTGTACTCCAGCAGATC
GGAGGCTGCAGTGTGACAGTGCCAGCCAATGTGCAGAGGTGGATGAGGTCTTGTGAAAACCTGGCTCCTT
TTAACACGGCCCTCAAGCTCCTTAAGTGA

Translation (242 aa):
MIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLLVLHRLLCEHFRV
LSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLF
SLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEKAAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQI
GGCSVTVPANVQRWMRSCENLAPFNTALKLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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