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Report for CCDS87445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87445.1 Public Homo sapiens 6 IFNGR1 24 110 108 CCDS HistoryNCBI Gene:3459Re-query CCDS DB by CCDS ID:87445.1Re-query CCDS DB by GeneID:3459See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645753.1 ENSP00000495103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645753.1Link to Ensembl Protein Viewer:ENSP00000495103.1Re-query CCDS DB by Nucleotide ID:ENST00000645753Re-query CCDS DB by Protein ID:ENSP00000495103
Original member Current member EBI ENST00000644894.1 ENSP00000495272.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644894.1Link to Ensembl Protein Viewer:ENSP00000495272.1Re-query CCDS DB by Nucleotide ID:ENST00000644894Re-query CCDS DB by Protein ID:ENSP00000495272
Original member Current member EBI ENST00000647124.1 ENSP00000496549.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647124.1Link to Ensembl Protein Viewer:ENSP00000496549.1Re-query CCDS DB by Nucleotide ID:ENST00000647124Re-query CCDS DB by Protein ID:ENSP00000496549
Original member Current member EBI ENST00000696693.1 ENSP00000512814.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696693.1Link to Ensembl Protein Viewer:ENSP00000512814.1Re-query CCDS DB by Nucleotide ID:ENST00000696693Re-query CCDS DB by Protein ID:ENSP00000512814
Original member Current member NCBI NM_001363527.1 NP_001350456.1 Accepted alive Link to Nucleotide Sequence:NM_001363527.1Link to Protein Sequence:NP_001350456.1Re-query CCDS DB by Nucleotide ID:NM_001363527Re-query CCDS DB by Protein ID:NP_001350456Link to BLAST:NP_001350456.1

Chromosomal Locations for CCDS 87445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137198031 137198639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137200881 137201008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137203499 137203685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137204332 137204504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137206136 137206308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137206963 137207039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGAACCCTATCGTATATTGGGAGTACCAGATCATGCCACAGGTCCCTGTTTTTACCGTAGAGGTAAAGA
ACTATGGTGTTAAGAATTCAGAATGGATTGATGCCTGCATCAATATTTCTCATCATTATTGTAATATTTC
TGATCATGTTGGTGATCCATCAAATTCTCTTTGGGTCAGAGTTAAAGCCAGGGTTGGACAAAAAGAATCT
GCCTATGCAAAGTCAGAAGAATTTGCTGTATGCCGAGATGGAAAAATTGGACCACCTAAACTGGATATCA
GAAAGGAGGAGAAGCAAATCATGATTGACATATTTCACCCTTCAGTTTTTGTAAATGGAGACGAGCAGGA
AGTCGATTATGATCCCGAAACTACCTGTTACATTAGGGTGTACAATGTGTATGTGAGAATGAACGGAAGT
GAGATCCAGTATAAAATACTCACGCAGAAGGAAGATGATTGTGACGAGATTCAGTGCCAGTTAGCGATTC
CAGTATCCTCACTGAATTCTCAGTACTGTGTTTCAGCAGAAGGAGTCTTACATGTGTGGGGTGTTACAAC
TGAAAAGTCAAAAGAAGTTTGTATTACCATTTTCAATAGCAGTATAAAAGGTTCTCTTTGGATTCCAGTT
GTTGCTGCTTTACTACTCTTTCTAGTGCTTAGCCTGGTATTCATCTGTTTTTATATTAAGAAAATTAATC
CATTGAAGGAAAAAAGCATAATATTACCCAAGTCCTTGATCTCTGTGGTAAGAAGTGCTACTTTAGAGAC
AAAACCTGAATCAAAATATGTATCACTCATCACGTCATACCAGCCATTTTCCTTAGAAAAGGAGGTGGTC
TGTGAAGAGCCGTTGTCTCCAGCAACAGTTCCAGGCATGCATACCGAAGACAATCCAGGAAAAGTGGAAC
ATACAGAAGAACTTTCTAGTATAACAGAAGTGGTGACTACTGAAGAAAATATTCCTGACGTGGTCCCGGG
CAGCCATCTGACTCCAATAGAGAGAGAGAGTTCTTCACCTTTAAGTAGTAACCAGTCTGAACCTGGCAGC
ATCGCTTTAAACTCGTATCACTCCAGAAATTGTTCTGAGAGTGATCACTCCAGAAATGGTTTTGATACTG
ATTCCAGCTGTCTGGAATCACATAGCTCCTTATCTGACTCAGAATTTCCCCCAAATAATAAAGGTGAAAT
AAAAACAGAAGGACAAGAGCTCATAACCGTAATAAAAGCCCCCACCTCCTTTGGTTATGATAAACCACAT
GTGCTAGTGGATCTACTTGTGGATGATAGCGGTAAAGAGTCCTTGATTGGTTATAGACCAACAGAAGATT
CCAAAGAATTTTCATGA

Translation (448 aa):
MNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKES
AYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNGS
EIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIFNSSIKGSLWIPV
VAALLLFLVLSLVFICFYIKKINPLKEKSIILPKSLISVVRSATLETKPESKYVSLITSYQPFSLEKEVV
CEEPLSPATVPGMHTEDNPGKVEHTEELSSITEVVTTEENIPDVVPGSHLTPIERESSSPLSSNQSEPGS
IALNSYHSRNCSESDHSRNGFDTDSSCLESHSSLSDSEFPPNNKGEIKTEGQELITVIKAPTSFGYDKPH
VLVDLLVDDSGKESLIGYRPTEDSKEFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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