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Report for CCDS87298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87298.1 Public Homo sapiens 5 DIMT1 24 110 108 CCDS HistoryNCBI Gene:27292Re-query CCDS DB by CCDS ID:87298.1Re-query CCDS DB by GeneID:27292See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506390.5 ENSP00000421754.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506390.5Link to Ensembl Protein Viewer:ENSP00000421754.1Re-query CCDS DB by Nucleotide ID:ENST00000506390Re-query CCDS DB by Protein ID:ENSP00000421754
Original member Current member NCBI NM_001348076.2 NP_001335005.1 Accepted alive Link to Nucleotide Sequence:NM_001348076.2Link to Protein Sequence:NP_001335005.1Re-query CCDS DB by Nucleotide ID:NM_001348076Re-query CCDS DB by Protein ID:NP_001335005Link to BLAST:NP_001335005.1

Chromosomal Locations for CCDS 87298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 62391971 62392006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62392171 62392234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62392926 62392990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62393955 62394047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62394484 62394607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62398511 62398560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62398646 62398739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62398820 62398881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62402036 62402122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62403273 62403346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62403694 62403772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCCGAAGGTCAAGTCGGGGGCCATCGGCCGCCGCCGCGGGCGGCAGGAGCAGCGCCGGGAGCTGAAGA
GCGCTGGAGGACTCATGTTCAACACGGGGATTGGGCAGCACATTTTGAAAAATCCTCTCATTATTAACAG
CATTATCGATAAGGCTGCCTTAAGACCAACTGATGTAGTGCTGGAAGTTGGACCTGGAACTGGCAACATG
ACTGTAAAGTTGTTAGAAAAGGCAAAAAAGGTTGTTGCTTGTGAACTTGACCCAAGGCTAGTAGCTGAAC
TTCACAAAAGAGTTCAGGGCACGCCTGTGGCCAGCAAACTTCAAGTACTGGTGGGTGATGTGCTGAAAAC
AGATTTGCCATTCTTTGATACTTGTGTGGCAAATTTGCCTTATCAGATCTCTTCACCTTTTGTCTTCAAG
CTGTTGCTACATCGACCTTTTTTCAGGTGTGCTATACTTATGTTTCAAAGAGAATTTGCCCTCCGACTGG
TTGCAAAACCTGGAGATAAGTTATACTGCAGACTCTCAATTAATACACAGCTGTTGGCACGTGTGGACCA
TCTAATGAAAGTGGGAAAGAATAACTTCAGACCACCGCCCAAGGTGGAATCCAGTGTTGTAAGGATAGAA
CCTAAGAATCCACCACCACCCATCAATTTTCAGGAATGGGATGGTCTAGTAAGGATAACCTTTGTTAGGA
AAAACAAGACACTCTCTGCTGCATTTAAATCAAGTGCAGTGCAACAACTCTTGGAAAAAAACTACAGAAT
TCACTGTTCAGTCCATAATATTGTCAGTGCTGCTGTGTATCCTGTGAAACAGATATGA

Translation (275 aa):
MPKVKSGAIGRRRGRQEQRRELKSAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNM
TVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFK
LLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIE
PKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIVSAAVYPVKQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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