NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87294.1 Public Homo sapiens 5 DNAJC21 24 110 108 CCDS HistoryNCBI Gene:134218Re-query CCDS DB by CCDS ID:87294.1Re-query CCDS DB by GeneID:134218See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 87294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642851.1 ENSP00000496545.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642851.1Link to Ensembl Protein Viewer:ENSP00000496545.1Re-query CCDS DB by Nucleotide ID:ENST00000642851Re-query CCDS DB by Protein ID:ENSP00000496545
Original member Current member NCBI NM_001348420.2 NP_001335349.1 Accepted alive Link to Nucleotide Sequence:NM_001348420.2Link to Protein Sequence:NP_001335349.1Re-query CCDS DB by Nucleotide ID:NM_001348420Re-query CCDS DB by Protein ID:NP_001335349Link to BLAST:NP_001335349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335349.1 544 Q5F1R6-3 544 100% 0 0

Chromosomal Locations for CCDS 87294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34929820 34929916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34933815 34933908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34935710 34935833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34936144 34936266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34937326 34937630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34938858 34939009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34941096 34941183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34944867 34945025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34945722 34945803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34950170 34950342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34953926 34954001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34954553 34954714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGAAGTGTCACTATGAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGAAGGCCTATC
GGAAGCTGGCCCTGAAATGGCACCCGGATAAAAATCTGGATAATGCCGCAGAAGCAGCTGAACAATTTAA
ATTAATCCAAGCAGCATATGATGTGTTGAGTGACCCTCAGGAAAGAGCATGGTATGATAATCATAGAGAG
GCCCTACTTAAAGGTGGGTTTGATGGCGAATATCAAGATGACAGCTTAGATTTGCTACGCTATTTCACCG
TTACCTGTTATTCTGGTTATGGAGATGATGAAAAGGGATTTTACACGGTGTATCGTAATGTTTTTGAAAT
GATTGCCAAGGAAGAACTAGAATCTGTGTTAGAGGAAGAGGTTGATGATTTCCCAACTTTTGGAGACTCC
CAGAGTGACTATGATACGGTAGTCCATCCTTTCTACGCTTATTGGCAGAGTTTCTGCACTCAAAAGAATT
TTGCATGGAAGGAAGAATATGATACACGACAGGCTTCAAACCGCTGGGAAAAACGAGCCATGGAAAAAGA
AAACAAAAAGATTCGGGACAAAGCAAGGAAAGAGAAGAATGAGCTTGTCCGTCAGCTGGTAGCTTTCATT
CGTAAAAGAGATAAAAGAGTGCAGGCGCATCGAAAACTTGTGGAAGAACAGAATGCAGAGAAGGCGAGGA
AAGCCGAAGAGATGAGGCGGCAGCAGAAGCTAAAGCAGGCCAAACTGGTGGAGCAGTACAGAGAACAGAG
CTGGATGACTATGGCCAATTTGGAGAAAGAGCTCCAGGAGATGGAGGCACGGTACGAGAAGGAGTTTGGA
GATGGATCGGATGAAAATGAAATGGAAGAACATGAACTCAAAGATGAGGAGGATGGTAAAGACAGTGATG
AGGCCGAGGACGCTGAGCTCTATGATGACCTTTACTGCCCAGCATGTGACAAATCGTTCAAGACAGAAAA
GGCCATGAAGAATCACGAGAAGTCAAAGAAGCATCGGGAAATGGTGGCCTTGCTAAAACAACAGCTGGAG
GAGGAAGAAGAAAATTTTTCAAGACCTCAAATTGATGAAAATCCATTAGATGACAATTCTGAGGAAGAAA
TGGAAGATGCACCAAAACAAAAAGTCAAGTATTTGACATTTCGATTTATATTTGCTCTTAGGCTTTCTAA
AAAACAGAAGAAAAAGAAACAGAAACCAGCACAGAATTATGATGACAATTTCAATGTAAATGGACCTGGA
GAAGGAGTAAAGGTTGATCCAGAAGATACTAACTTAAATCAAGACAGTGCCAAAGAATTGGAAGATAGTC
CCCAGGAAAATGTCAGTGTCACAGAGATCATTAAACCATGTGATGATCCAAAAAGTGAAGCTAAAAGTGT
TCCTAAACCCAAAGGAAAGAAAACCAAAGATATGAAAAAACCTGTCAGAGTACCTGCTGAACCACAAACA
ATGAGTGTTCTTATCAGCTGTACAACCTGCCATAGTGAATTTCCATCTCGGAATAAACTTTTTGACCATC
TAAAGGCCACAGGTCATGCAAGAGCACCTTCATCATCGTCTTTAAACAGCGCAACAAGTAGTCAAAGCAA
GAAAGAGAAACGTAAAAACAGATAG

Translation (544 aa):
MKCHYEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNHRE
ALLKGGFDGEYQDDSLDLLRYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELESVLEEEVDDFPTFGDS
QSDYDTVVHPFYAYWQSFCTQKNFAWKEEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFI
RKRDKRVQAHRKLVEEQNAEKARKAEEMRRQQKLKQAKLVEQYREQSWMTMANLEKELQEMEARYEKEFG
DGSDENEMEEHELKDEEDGKDSDEAEDAELYDDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQQLE
EEEENFSRPQIDENPLDDNSEEEMEDAPKQKVKYLTFRFIFALRLSKKQKKKKQKPAQNYDDNFNVNGPG
EGVKVDPEDTNLNQDSAKELEDSPQENVSVTEIIKPCDDPKSEAKSVPKPKGKKTKDMKKPVRVPAEPQT
MSVLISCTTCHSEFPSRNKLFDHLKATGHARAPSSSSLNSATSSQSKKEKRKNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH