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Report for CCDS87127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87127.1 Public Homo sapiens 3 RABL3 24 110 108 CCDS HistoryNCBI Gene:285282Re-query CCDS DB by CCDS ID:87127.1Re-query CCDS DB by GeneID:285282See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000483733.1 ENSP00000419986.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483733.1Link to Ensembl Protein Viewer:ENSP00000419986.1Re-query CCDS DB by Nucleotide ID:ENST00000483733Re-query CCDS DB by Protein ID:ENSP00000419986
Original member Current member NCBI NM_001363964.1 NP_001350893.1 Accepted alive Link to Nucleotide Sequence:NM_001363964.1Link to Protein Sequence:NP_001350893.1Re-query CCDS DB by Nucleotide ID:NM_001363964Re-query CCDS DB by Protein ID:NP_001350893Link to BLAST:NP_001350893.1

Chromosomal Locations for CCDS 87127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 120689823 120689888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120690449 120690487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120698423 120698573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120706000 120706114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120709780 120709909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120730696 120730787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 120742462 120742507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCGTCCCTGGATCGGGTGAAGGTACTGGTGTTGGGAGACTCAGGTGTTGGGAAATCTTCGTTAGTCC
ATCTCCTATGCCAAAATCAAGTGCTGGGAAATCCATCATGGACTGTGGGCTGCTCAGTGGATGTCAGAGT
TCATGATTACAAAGAAGGAACCCCAGAAGAGAAGACCTACTACATAGAATTATGGGATGTTGGAGGCTCT
GTGGGCAGTGCCAGCAGCGTGAAAAGCACAAGAGCAGTATTCTACAACTCCGTAAATGGTATTATTTTCG
TACACGACTTAACAAATAAGAAGTCCTCCCAAAACTTGCGTCGTTGGTCATTGGAAGCTCTCAACAGGGA
TTTGGTGCCAACTGGAGTCTTGGTGACAAATGGGGATTATGATCAAGAACAGTTTGCTGATAACCAAATA
CCACTGTTGGTAATAGGGACTAAACTGGACCAGATTCATGAAACAAAGCGCCATGAAGTTTTAACTAGGA
CTGCTTTCCTGGCTGAGGATTTCAATCCAGAAGAAATTAATTTGGTCATAGAGAAGAGATACTTTTTAAG
AGAAGGTAATCAGATTCCAGGCTTTCCTGATCGGAAAAGATTTGGGGCAGGAACATTAAAGAGCCTTCAT
TATGACTGA

Translation (212 aa):
MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDVGGS
VGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTNGDYDQEQFADNQI
PLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLH
YD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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