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Report for CCDS8709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8709.1 Public Homo sapiens 12 FGFR1OP2 24 110 108 CCDS HistoryNCBI Gene:26127Re-query CCDS DB by CCDS ID:8709.1Re-query CCDS DB by GeneID:26127See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229395.8 ENSP00000229395.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229395.8Link to Ensembl Protein Viewer:ENSP00000229395.3Re-query CCDS DB by Nucleotide ID:ENST00000229395Re-query CCDS DB by Protein ID:ENSP00000229395
Original member Current member NCBI NM_015633.3 NP_056448.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015633.3Link to Protein Sequence:NP_056448.1Re-query CCDS DB by Nucleotide ID:NM_015633Re-query CCDS DB by Protein ID:NP_056448Link to BLAST:NP_056448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056448.1 253 Q9NVK5-1 253 100% 0 0

Chromosomal Locations for CCDS 8709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 26954159 26954293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26956543 26956660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26957601 26957743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26960515 26960628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26963342 26963455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 26964596 26964733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAGTTGCACAATTGAGAAGGCACTTGCCGACGCTAAAGCTCTTGTTGAAAGATTAAGAGATCATGACG
ATGCAGCAGAATCTCTGATTGAGCAAACCACAGCTCTCAACAAGCGAGTAGAAGCCATGAAACAGTATCA
GGAAGAAATTCAAGAACTTAATGAAGTCGCGAGACATCGGCCACGGTCCACGTTAGTTATGGGAATCCAG
CAAGAAAACAGACAAATCAGAGAGTTGCAACAAGAAAACAAAGAATTACGTACATCTCTGGAAGAACATC
AGTCGGCCTTGGAACTTATAATGAGCAAGTACCGAGAACAAATGTTTAGATTGCTAATGGCTAGCAAAAA
AGATGATCCGGGTATAATAATGAAGTTAAAAGAGCAGCACTCCAAGATTGACATGGTACATCGTAACAAG
TCCGAAGGATTCTTCCTTGATGCATCTCGACACATCCTTGAAGCACCTCAACATGGACTGGAGAGAAGGC
ACTTGGAAGCAAATCAGAATGAACTGCAAGCACATGTTGACCAGATAACTGAAATGGCAGCAGTAATGAG
GAAAGCCATTGAAATTGACGAGCAACAGGGTTGCAAGGAACAAGAACGAATATTTCAACTTGAACAAGAA
AACAAAGGCTTGAGAGAGATCCTTCAAATAACTCGAGAATCATTTTTGAACCTAAGGAAAGATGATGCGT
CGGAAAGTACTTCTTTGTCAGCATTAGTGACCAACAGTGATTTGAGTCTGAGGAAGAGCTGA

Translation (253 aa):
MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQ
QENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNK
SEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE
NKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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