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Report for CCDS87052.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87052.2 Public Homo sapiens 3 BTD 24 110 108 CCDS HistoryNCBI Gene:686Re-query CCDS DB by CCDS ID:87052.2Re-query CCDS DB by GeneID:686See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 87052.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417015.3 ENSP00000403775.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417015.3Link to Ensembl Protein Viewer:ENSP00000403775.3Re-query CCDS DB by Nucleotide ID:ENST00000417015Re-query CCDS DB by Protein ID:ENSP00000403775
Original member Current member EBI ENST00000482824.2 ENSP00000494864.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482824.2Link to Ensembl Protein Viewer:ENSP00000494864.1Re-query CCDS DB by Nucleotide ID:ENST00000482824Re-query CCDS DB by Protein ID:ENSP00000494864
Original member Current member EBI ENST00000672336.1 ENSP00000500267.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672336.1Link to Ensembl Protein Viewer:ENSP00000500267.1Re-query CCDS DB by Nucleotide ID:ENST00000672336Re-query CCDS DB by Protein ID:ENSP00000500267
Original member NCBI NM_001281726.2 NP_001268655.2 Updated not alive Link to Nucleotide Sequence:NM_001281726.2Link to Protein Sequence:NP_001268655.2Re-query CCDS DB by Nucleotide ID:NM_001281726Re-query CCDS DB by Protein ID:NP_001268655
Current member NCBI NM_001281726.3 NP_001268655.2 Accepted alive Link to Nucleotide Sequence:NM_001281726.3Link to Protein Sequence:NP_001268655.2Re-query CCDS DB by Nucleotide ID:NM_001281726Re-query CCDS DB by Protein ID:NP_001268655Link to BLAST:NP_001268655.2

Chromosomal Locations for CCDS 87052.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15635440 15635688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15641908 15642138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGTCTGGAGCCAGAAGTAAGCTTGCTCTTTTCCTCTGCGGCTGTTACGTGGTTGCCCTGGGAGCCCACA
CCGGGGAGGAGAGCGTGGCTGACCATCACGAGGCTGAATATTATGTGGCTGCCGTGTATGAGCATCCATC
CATCCTGAGTCTGAACCCTCTGGCTCTCATCAGCCGCCAAGAGGCCTTGGAGCTCATGAACCAGAACCTT
GACATCTATGAACAGCAAGTGATGACTGCAGCCCAAAAGGATGTACAGATTATAGTGTTTCCAGAAGATG
GCATTCATGGATTCAACTTTACAAGAACATCCATTTATCCATTTTTGGACTTCATGCCGTCTCCCCAGGT
GGTCAGGTGGAACCCATGCCTGGAGCCTCACCGCTTCAATGACACAGAGGTGATTCCTGCCTTTTTCCTC
AGTAGGCTGAGGGTACACAGAGGTGATCTAAGTCAGGGACCAGAAGCTGTGACATGTTAA

Translation (159 aa):
MSGARSKLALFLCGCYVVALGAHTGEESVADHHEAEYYVAAVYEHPSILSLNPLALISRQEALELMNQNL
DIYEQQVMTAAQKDVQIIVFPEDGIHGFNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVIPAFFL
SRLRVHRGDLSQGPEAVTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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