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Report for CCDS87046.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87046.2 Public Homo sapiens 3 PPARG 24 110 108 CCDS HistoryNCBI Gene:5468Re-query CCDS DB by CCDS ID:87046.2Re-query CCDS DB by GeneID:5468See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 87046.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397000.6 ENSP00000380196.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397000.6Link to Ensembl Protein Viewer:ENSP00000380196.2Re-query CCDS DB by Nucleotide ID:ENST00000397000Re-query CCDS DB by Protein ID:ENSP00000380196
Original member Current member NCBI NM_001330615.4 NP_001317544.2 Accepted alive Link to Nucleotide Sequence:NM_001330615.4Link to Protein Sequence:NP_001317544.2Re-query CCDS DB by Nucleotide ID:NM_001330615Re-query CCDS DB by Protein ID:NP_001317544Link to BLAST:NP_001317544.2
Original member Current member NCBI NM_001374261.3 NP_001361190.2 Accepted alive Link to Nucleotide Sequence:NM_001374261.3Link to Protein Sequence:NP_001361190.2Re-query CCDS DB by Nucleotide ID:NM_001374261Re-query CCDS DB by Protein ID:NP_001361190Link to BLAST:NP_001361190.2
Original member Current member NCBI NM_001374262.3 NP_001361191.2 Accepted alive Link to Nucleotide Sequence:NM_001374262.3Link to Protein Sequence:NP_001361191.2Re-query CCDS DB by Nucleotide ID:NM_001374262Re-query CCDS DB by Protein ID:NP_001361191Link to BLAST:NP_001361191.2

Chromosomal Locations for CCDS 87046.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12379712 12379931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12381322 12381491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12392614 12392752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12405882 12406081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12433898 12433915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGG
AAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCCAGCATTTCTACTCCACA
TTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTGCAGATTACAAGTATGACCTGAAACTTCAA
GAGTACCAAAGTGCAATCAAAGTGGAGCCTGCATCTCCACCTTATTATTCTGAGAAGACTCAGCTCTACA
ATAAGCCTCATGAAGAGCCTTCCAACTCCCTCATGGCAATTGAATGTCGTGTCTGTGGAGATAAAGCTTC
TGGATTTCACTATGGAGTTCATGCTTGTGAAGGATGCAAGGGTTTCTTCCGGAGAACAATCAGATTGAAG
CTTATCTATGACAGATGTGATCTTAACTGTCGGATCCACAAAAAAAGTAGAAATAAATGTCAGTACTGTC
GGTTTCAGAAATGCCTTGCAGTGGGGATGTCTCATAATGCCATCAGGTTTGGGCGGATGCCACAGGCCGA
GAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGACCAGCTGAATCCAGAGTCCGCTGACCTCCGG
GCCCTGGCAAAACATTTGTATGACTCATACATAAAGTCCTTCCCGCTGACCAAAGCAAAGGCGAGGGCGA
TCTTGACAGGAAAGACAACAGACAAATCAACCGCCCAGGTTTGCTGA

Translation (248 aa):
MVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFSSISTPHYEDIPFTRTDPVVADYKYDLKLQ
EYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK
LIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLR
ALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSTAQVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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