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Report for CCDS87035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87035.1 Public Homo sapiens 22 LMF2 24 110 108 CCDS HistoryNCBI Gene:91289Re-query CCDS DB by CCDS ID:87035.1Re-query CCDS DB by GeneID:91289See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216080.5 ENSP00000216080.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000216080.5Link to Ensembl Protein Viewer:ENSP00000216080.5Re-query CCDS DB by Nucleotide ID:ENST00000216080Re-query CCDS DB by Protein ID:ENSP00000216080
Original member Current member NCBI NM_001363816.2 NP_001350745.1 Accepted alive Link to Nucleotide Sequence:NM_001363816.2Link to Protein Sequence:NP_001350745.1Re-query CCDS DB by Nucleotide ID:NM_001363816Re-query CCDS DB by Protein ID:NP_001350745Link to BLAST:NP_001350745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350745.1 682 Q9BU23-2 682 100% 0 0

Chromosomal Locations for CCDS 87035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50503391 50503699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50503808 50503904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504340 50504451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504559 50504727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504802 50504984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505057 50505153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505229 50505334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505403 50505537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505674 50505815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506035 50506213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506285 50506502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506638 50506666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506782 50507054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGACATGCCCTCCCACAGGCCTGTATGGCCCCGAGGGCATCCTACCTGCAAGGAGGACGCTGCGGCCTC
AGGGCAAGGGGCGCTGGCAGCAGCTGTGGGAGACCCCGACGCTGCTGTGGGAAGCGCCGAGACTGGGGCT
GGACACGGCCCAGGGCCTGGAGCTGCTGAGCCTGCTGGGTGCACTAGTGGCCCTGGGAGCCCTGCTGCTG
AGCCCACTGCGCCACCCTGTCATCTACTTGCTGCTTTGGGCCGCCTACCTGTCAGCCTGCCAGGTGGGCC
AGGTGTTCCTTTATTTCCAGTGGGACTCCCTGCTGCTAGAGACTGGCTTCCTGGCCGTGCTGGTGGCCCC
GCTGAGGCCAGCCTCCCACCGCAAGGAGGCCCCCCAGGGCAGGCAGGCAGGGGCCCTGCCCCACGAAGAC
CTCCCCTTCTGGCTGGTGCGATGGCTGCTGTTCCGCCTCATGTTCGCCTCAGGCGTGGTCAAGCTGACCA
GCCGCTGCCCTGCGTGGTGGGGGCTCACTGCCCTCACCTACCACTACGAGACCCAGTGCCTGCCCACGCC
CGCCGCCTGGTTCGCACACCACCTGCCGGTCTGGCTGCACAAGCTCAGCGTGGTGGCCACCTTCCTAATT
GAGATCGCTGTGCCGCCCCTGTTCTTCGCCCCCATTCGACGCCTGCGCTTGGCTGCTTTCTACTCGCAGG
TGCTGCTGCAGGTCCTGATTATCATCACCGGCAACTACAACTTCTTCAACCTGATGACGCTGGTGCTTAC
CACTGCGCTGCTGGACGACCAGCACCTGGCTGCTGAGCCTGGCCACGGCAGCCGCAAGAAGACGGCCACC
TCCTGGCCCAAGGCCCTGCTGGCCACCCTGTCGCTGCTGCTGGAACTAGCCGTCTACGGGCTTCTGGCCT
ATGGCACTGTGCACTACTTTGGCCTGGAGGTTGACTGGCAGCAGCGCACCATCCACTCCAGAACCACTTT
CACCTTCCACCAGTTTTCTCAGTGGCTGAAGACACTGACGCTGCCCACTGTGTGGCTGGGTGTGGCCTCC
CTGGTCTGGGAGCTGCTGAGTGCCCTGTGGAGGTGGACCCAGGTGCGGGGCTGGCTACGGAAGCTCAGTG
CTGTAGTCCAACTGTCCCTTGTGGGCACTGCGACCGTGGCCTTGTTCCTGATTAGCCTGGTGCCGTACTC
CTACGTGGAGCCCGGGACCCACGGGCGCCTCTGGACCGGGGCCCACCGCCTGTTTGGTGCCGTGGAGCAC
CTACAGCTGGCCAACTCCTACGGCCTCTTCCGCCGCATGACTGGGCTTGGTGGACGGCCTGAGGTGGTGC
TGGAGGGCAGTTACGACGGCCACCACTGGACGGAGATCGAGTTCATGTACAAGCCTGGGAACCTGAGCCG
GCCGCCCCCGGTTGTGGTGCCCCACCAGCCACGCCTGGACTGGCAGATGTGGTTTGCAGCCCTGGGCCCA
CACACGCACAGCCCGTGGTTCACAAGCCTGGTCTTGCGCCTGCTGCAGGGCAAGGAGCCAGTGATCCGCC
TTGTCCAGAGCCAAGTGGCCAGGTATCCCTTCCACAAGCAGCCGCCCACCTACGTCCGAGCCCAGCGCTA
CAAGTACTGGTTCTCCCAGCCTGGGGAGCAGGGCCAGTGGTGGCGGCGCCAGTGGGTGGAGGAGTTCTTC
CCATCCGTGTCCCTGGGGGACCCCACGCTGGAGACGCTGCTCAGGCAGTTTGGACTACAGGAGAAAAGCC
CACCTCGCACCCGCAGCGCCAACAGCACCCTGGCCCAGGCCCTCCACTGGACTCGCTCTCAGCTGTCTCC
CCTGGAGGCCCCCGCCCTGCTCTGGGGGCTCCTCATGGCCGTGGGGGCTGTCAGATTTGTGCAAGCCCTG
CTAGCACCCTGTTCTCTCCGGTCCTCCCCGCTGGCACCAGTCAGCGGGGAGAAGCGCAGGCCAGCCTCCC
AGAAAGACTCCGGAGCTGCCTCCGAACAGGCCACCGCAGCCCCCAACCCCTGCTCCAGTAGTTCGAGGAC
CACCCGGCGAAAGAAGTAG

Translation (682 aa):
MTCPPTGLYGPEGILPARRTLRPQGKGRWQQLWETPTLLWEAPRLGLDTAQGLELLSLLGALVALGALLL
SPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLVAPLRPASHRKEAPQGRQAGALPHED
LPFWLVRWLLFRLMFASGVVKLTSRCPAWWGLTALTYHYETQCLPTPAAWFAHHLPVWLHKLSVVATFLI
EIAVPPLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLVLTTALLDDQHLAAEPGHGSRKKTAT
SWPKALLATLSLLLELAVYGLLAYGTVHYFGLEVDWQQRTIHSRTTFTFHQFSQWLKTLTLPTVWLGVAS
LVWELLSALWRWTQVRGWLRKLSAVVQLSLVGTATVALFLISLVPYSYVEPGTHGRLWTGAHRLFGAVEH
LQLANSYGLFRRMTGLGGRPEVVLEGSYDGHHWTEIEFMYKPGNLSRPPPVVVPHQPRLDWQMWFAALGP
HTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPFHKQPPTYVRAQRYKYWFSQPGEQGQWWRRQWVEEFF
PSVSLGDPTLETLLRQFGLQEKSPPRTRSANSTLAQALHWTRSQLSPLEAPALLWGLLMAVGAVRFVQAL
LAPCSLRSSPLAPVSGEKRRPASQKDSGAASEQATAAPNPCSSSSRTTRRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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