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Report for CCDS86930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86930.1 Public Homo sapiens 2 SEPTIN2 24 110 108 CCDS HistoryNCBI Gene:4735Re-query CCDS DB by CCDS ID:86930.1Re-query CCDS DB by GeneID:4735See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407971.5 ENSP00000384525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407971.5Link to Ensembl Protein Viewer:ENSP00000384525.1Re-query CCDS DB by Nucleotide ID:ENST00000407971Re-query CCDS DB by Protein ID:ENSP00000384525
Original member Current member NCBI NM_001349304.2 NP_001336233.1 Accepted alive Link to Nucleotide Sequence:NM_001349304.2Link to Protein Sequence:NP_001336233.1Re-query CCDS DB by Nucleotide ID:NM_001349304Re-query CCDS DB by Protein ID:NP_001336233Link to BLAST:NP_001336233.1
Original member Current member NCBI NM_001349305.2 NP_001336234.1 Accepted alive Link to Nucleotide Sequence:NM_001349305.2Link to Protein Sequence:NP_001336234.1Re-query CCDS DB by Nucleotide ID:NM_001349305Re-query CCDS DB by Protein ID:NP_001336234Link to BLAST:NP_001336234.1
Original member Current member NCBI NM_001349306.2 NP_001336235.1 Accepted alive Link to Nucleotide Sequence:NM_001349306.2Link to Protein Sequence:NP_001336235.1Re-query CCDS DB by Nucleotide ID:NM_001349306Re-query CCDS DB by Protein ID:NP_001336235Link to BLAST:NP_001336235.1

Chromosomal Locations for CCDS 86930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241326104 241326113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335126 241335212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335975 241336098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337382 241337516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337673 241337790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241342992 241343093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241343752 241343897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241346166 241346249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241348134 241348191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241350073 241350174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGTGGTCGGTGAATCAGGTCTAGGAAAATCGACTCTCATAAACAGCCTATTCCTAACTGATCTGTACC
CAGAAAGAGTCATACCTGGAGCAGCAGAAAAAATTGAAAGAACTGTCCAGATTGAGGCTTCAACTGTTGA
AATTGAAGAGCGAGGGGTCAAGCTACGCCTGACAGTGGTAGATACCCCTGGCTATGGTGACGCTATCAAC
TGCAGAGATTGTTTTAAGACAATTATCTCCTATATTGATGAGCAATTTGAGAGGTACCTGCATGACGAGA
GCGGCTTGAACAGGCGGCACATCATTGATAATAGGGTGCATTGTTGCTTTTACTTTATTTCACCTTTTGG
ACATGGACTTAAGCCCTTAGATGTGGCGTTTATGAAGGCAATACACAACAAGGTGAATATTGTGCCTGTC
ATTGCAAAAGCTGACACTCTCACCCTGAAGGAACGGGAGCGGCTGAAGAAAAGGATTCTGGATGAAATTG
AAGAACATAACATCAAAATCTATCACTTACCTGATGCAGAATCAGATGAAGATGAAGATTTTAAAGAGCA
GACTAGACTTCTCAAGGCTAGCATCCCATTCTCTGTGGTTGGATCCAATCAGTTGATTGAAGCCAAAGGA
AAGAAGGTCAGAGGCCGCCTCTACCCCTGGGGTGTTGTGGAAGTGGAGAACCCAGAGCACAATGACTTTC
TGAAGCTGAGAACCATGCTCATCACCCACATGCAGGATCTCCAGGAGGTGACCCAGGACCTTCATTATGA
AAACTTCCGTTCTGAGAGACTCAAGAGAGGCGGCAGGAAAGTGGAGAATGAGGACATGAATAAAGACCAG
ATCTTGCTGGAAAAAGAAGCTGAGCTCCGCCGCATGCAAGAGATGATTGCAAGGATGCAGGCGCAGATGC
AGATGCAGATGCAGGGCGGGGATGGCGATGGCGGGGCTCTCGGGCACCACGTGTAA

Translation (321 aa):
MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN
CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPV
IAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKG
KKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQ
ILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALGHHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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