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Report for CCDS86877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86877.1 Public Homo sapiens 2 NT5DC4 24 110 108 CCDS HistoryNCBI Gene:284958Re-query CCDS DB by CCDS ID:86877.1Re-query CCDS DB by GeneID:284958See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327581.4 ENSP00000330247.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327581.4Link to Ensembl Protein Viewer:ENSP00000330247.4Re-query CCDS DB by Nucleotide ID:ENST00000327581Re-query CCDS DB by Protein ID:ENSP00000330247
Original member Current member NCBI NM_001350494.2 NP_001337423.1 Accepted alive Link to Nucleotide Sequence:NM_001350494.2Link to Protein Sequence:NP_001337423.1Re-query CCDS DB by Nucleotide ID:NM_001350494Re-query CCDS DB by Protein ID:NP_001337423Link to BLAST:NP_001337423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337423.1 428 Q86YG4-1 428 100% 0 0

Chromosomal Locations for CCDS 86877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112721537 112721547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112721818 112721891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112721986 112722103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112722183 112722278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112722498 112722589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112722714 112722771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112723081 112723174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112723418 112723468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112723719 112723802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112724094 112724126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112724781 112724888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112725174 112725240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112725382 112725552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112726238 112726289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112726678 112726738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112729627 112729704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112742412 112742450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGCCTGCATGGATTTTTGTCAACCGCAGCCTGGCGCTGGGGAAGATTCGTTGCTTTGGCTTCGACATGG
ACTACACTCTGGCTGCCTACAAGTCCCCAGCTTATGAGGCCCTGACCTTCGAGCTGCTGCTGGAGCGCCT
GGTGTGCATTGGGTACCCGCATGAGATCCTGCGCTACACCTACGACCCCACCTTCCCCACCAGGCGGCTG
GTGTTCGATGAACTCTATGGGAACCTGCTGAAGGTGGACGCCCACGGGAATGTGCTGCTGGGTGCCTATG
GCTTCACCTTCCTCTCGGAGGCAGAGATCTGGAGCTTCTACCCCAGCAAGTTCATTCAGAGGGACGACCT
GCAGTGTTTCTACATACTCAACATGCTCTTCAACCTGCCTGAAACCTACCTCTATGCCTGCTTGGTGGAC
TTCTTCTCTGGCTGCTCCCGTTACACTAATTGTGACACCGGCTATCAGCATGGGAACCTCTTCATGTCCT
TCCGAAGCCTCTTCCAGGATGTGACTGATGCCATGAATAACATCCACCAGTCGGGCTGTCTCAAGAAGAC
CCTGGAGGACTTGGAGAAATATGTGAAGAAGGATCCACGCCTCCCCATCCTGCTGGGGAAGATGAAGGAG
GTTGGGAAAGTGTTTCTGGCCACCAACAGCAGCTACAACTACACCAATGCCATCATGACCTACCTGTTCA
GCATCAGTGAGGCTGAAGCCTCGGGCAGGCCCTGGAGGTCCTACTTTGACCTGATCGTGGTGGACACGCA
GAAGCCCCACTTCTTTGCAGAGGGGTTGGTCCTGAGGCAGGTCAACACGGACTCAGGAAAGCTCCACGTG
GGCACCTACACAGGGCCCCACCAGCACTGTGCTGTCTACTCTGGAGGCTCTTCGGACATGGTGTGCGAGC
TGCTTGGGGTTCGGGGGATGGACATCCTGTACATTGGGGACCACATTTTTGGGGACATTCTCAAGTCCAA
GAAGCGTCAGGGCTGGCGGACTTGCCTGGTGGTTCCTGAGCTGTCCTGGGAGCTGGACATCTGGGCCCAG
GAGAAGGAGCGGTTGGAGGAGCTGAAGAGACTGGACACGCACCTGGCAGACATATACCAGCACATGGATG
GGAGCAGTTGTGAGCTGCAAGTCATCAACTTCACCAAGAGAGAGATCCAGATGCCACATGAGTCAGTTGT
GGAGCAAGAACAGGCCAATCTAGACCCTGCCTCCTGCCTCCTCTCCTGCAACCAGAGGTCTCTTCCAGCA
AAGAGCTGTTTGTCTTCTGCCATCTAG

Translation (428 aa):
MPAWIFVNRSLALGKIRCFGFDMDYTLAAYKSPAYEALTFELLLERLVCIGYPHEILRYTYDPTFPTRRL
VFDELYGNLLKVDAHGNVLLGAYGFTFLSEAEIWSFYPSKFIQRDDLQCFYILNMLFNLPETYLYACLVD
FFSGCSRYTNCDTGYQHGNLFMSFRSLFQDVTDAMNNIHQSGCLKKTLEDLEKYVKKDPRLPILLGKMKE
VGKVFLATNSSYNYTNAIMTYLFSISEAEASGRPWRSYFDLIVVDTQKPHFFAEGLVLRQVNTDSGKLHV
GTYTGPHQHCAVYSGGSSDMVCELLGVRGMDILYIGDHIFGDILKSKKRQGWRTCLVVPELSWELDIWAQ
EKERLEELKRLDTHLADIYQHMDGSSCELQVINFTKREIQMPHESVVEQEQANLDPASCLLSCNQRSLPA
KSCLSSAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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