NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86856.1 Public Homo sapiens 2 ST3GAL5 24 110 108 CCDS HistoryNCBI Gene:8869Re-query CCDS DB by CCDS ID:86856.1Re-query CCDS DB by GeneID:8869See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86856.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393805.6 ENSP00000377394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393805.6Link to Ensembl Protein Viewer:ENSP00000377394.1Re-query CCDS DB by Nucleotide ID:ENST00000393805Re-query CCDS DB by Protein ID:ENSP00000377394
Original member Current member EBI ENST00000640322.1 ENSP00000491564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640322.1Link to Ensembl Protein Viewer:ENSP00000491564.1Re-query CCDS DB by Nucleotide ID:ENST00000640322Re-query CCDS DB by Protein ID:ENSP00000491564
Original member Current member EBI ENST00000639432.1 ENSP00000491828.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639432.1Link to Ensembl Protein Viewer:ENSP00000491828.1Re-query CCDS DB by Nucleotide ID:ENST00000639432Re-query CCDS DB by Protein ID:ENSP00000491828
Original member Current member EBI ENST00000638986.1 ENSP00000491853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638986.1Link to Ensembl Protein Viewer:ENSP00000491853.1Re-query CCDS DB by Nucleotide ID:ENST00000638986Re-query CCDS DB by Protein ID:ENSP00000491853
Original member Current member EBI ENST00000640982.1 ENSP00000492299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640982.1Link to Ensembl Protein Viewer:ENSP00000492299.1Re-query CCDS DB by Nucleotide ID:ENST00000640982Re-query CCDS DB by Protein ID:ENSP00000492299
Original member Current member EBI ENST00000640992.1 ENSP00000492753.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000640992.1Link to Ensembl Protein Viewer:ENSP00000492753.1Re-query CCDS DB by Nucleotide ID:ENST00000640992Re-query CCDS DB by Protein ID:ENSP00000492753
Original member Current member NCBI NM_001354227.2 NP_001341156.1 Accepted alive Link to Nucleotide Sequence:NM_001354227.2Link to Protein Sequence:NP_001341156.1Re-query CCDS DB by Nucleotide ID:NM_001354227Re-query CCDS DB by Protein ID:NP_001341156Link to BLAST:NP_001341156.1
Original member Current member NCBI NM_001354229.2 NP_001341158.1 Accepted alive Link to Nucleotide Sequence:NM_001354229.2Link to Protein Sequence:NP_001341158.1Re-query CCDS DB by Nucleotide ID:NM_001354229Re-query CCDS DB by Protein ID:NP_001341158Link to BLAST:NP_001341158.1
Original member Current member NCBI NM_001354238.1 NP_001341167.1 Accepted alive Link to Nucleotide Sequence:NM_001354238.1Link to Protein Sequence:NP_001341167.1Re-query CCDS DB by Nucleotide ID:NM_001354238Re-query CCDS DB by Protein ID:NP_001341167Link to BLAST:NP_001341167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341156.1 390 Q9UNP4-2 390 100% 0 0
NP_001341158.1 390 Q9UNP4-2 390 100% 0 0
NP_001341167.1 390 Q9UNP4-2 390 100% 0 0

Chromosomal Locations for CCDS 86856.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85840144 85840392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85844396 85844554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85846377 85846563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85847861 85848204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85861181 85861292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85863362 85863483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGCCAAGTGAGTACACCTATGTGAAACTGAGAAGTGATTGCTCGAGGCCTTCCCTGCAATGGTACACCC
GAGCTCAAAGCAAGATGAGAAGGCCCAGCTTGTTATTAAAAGACATCCTCAAATGTACATTGCTTGTGTT
TGGAGTGTGGATCCTTTATATCCTCAAGTTAAATTATACTACTGAAGAATGTGACATGAAAAAAATGCAT
TATGTGGACCCTGACCATGTAAAGAGAGCTCAGAAATATGCTCAGCAAGTCTTGCAGAAGGAATGTCGTC
CCAAGTTTGCCAAGACATCAATGGCGCTGTTATTTGAGCACAGGTATAGCGTGGACTTACTCCCTTTTGT
GCAGAAGGCCCCCAAAGACAGTGAAGCTGAGTCCAAGTACGATCCTCCTTTTGGGTTCCGGAAGTTCTCC
AGTAAAGTCCAGACCCTCTTGGAACTCTTGCCAGAGCACGACCTCCCTGAACACTTGAAAGCCAAGACCT
GTCGGCGCTGTGTGGTTATTGGAAGCGGAGGAATACTGCACGGATTAGAACTGGGCCACACCCTGAACCA
GTTCGATGTTGTGATAAGGTTAAACAGTGCACCAGTTGAGGGATATTCAGAACATGTTGGAAATAAAACT
ACTATAAGGATGACTTATCCAGAGGGCGCACCACTGTCTGACCTTGAATATTATTCCAATGACTTATTTG
TTGCTGTTTTATTTAAGAGTGTTGATTTCAACTGGCTTCAAGCAATGGTAAAAAAGGAAACCCTGCCATT
CTGGGTACGACTCTTCTTTTGGAAGCAGGTGGCAGAAAAAATCCCACTGCAGCCAAAACATTTCAGGATT
TTGAATCCAGTTATCATCAAAGAGACTGCCTTTGACATCCTTCAGTACTCAGAGCCTCAGTCAAGGTTCT
GGGGCCGAGATAAGAACGTCCCCACAATCGGTGTCATTGCCGTTGTCTTAGCCACACATCTGTGCGATGA
AGTCAGTTTGGCGGGTTTTGGATATGACCTCAATCAACCCAGAACACCTTTGCACTACTTCGACAGTCAA
TGCATGGCTGCTATGAACTTTCAGACCATGCATAATGTGACAACGGAAACCAAGTTCCTCTTAAAGCTGG
TCAAAGAGGGAGTGGTGAAAGATCTCAGTGGAGGCATTGATCGTGAATTTTGA

Translation (390 aa):
MPSEYTYVKLRSDCSRPSLQWYTRAQSKMRRPSLLLKDILKCTLLVFGVWILYILKLNYTTEECDMKKMH
YVDPDHVKRAQKYAQQVLQKECRPKFAKTSMALLFEHRYSVDLLPFVQKAPKDSEAESKYDPPFGFRKFS
SKVQTLLELLPEHDLPEHLKAKTCRRCVVIGSGGILHGLELGHTLNQFDVVIRLNSAPVEGYSEHVGNKT
TIRMTYPEGAPLSDLEYYSNDLFVAVLFKSVDFNWLQAMVKKETLPFWVRLFFWKQVAEKIPLQPKHFRI
LNPVIIKETAFDILQYSEPQSRFWGRDKNVPTIGVIAVVLATHLCDEVSLAGFGYDLNQPRTPLHYFDSQ
CMAAMNFQTMHNVTTETKFLLKLVKEGVVKDLSGGIDREF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH