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Report for CCDS8673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8673.1 Public Homo sapiens 12 RERG 24 110 108 CCDS HistoryNCBI Gene:85004Re-query CCDS DB by CCDS ID:8673.1Re-query CCDS DB by GeneID:85004See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256953.6 ENSP00000256953.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256953.6Link to Ensembl Protein Viewer:ENSP00000256953.2Re-query CCDS DB by Nucleotide ID:ENST00000256953Re-query CCDS DB by Protein ID:ENSP00000256953
Original member Current member EBI ENST00000536465.5 ENSP00000438280.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536465.5Link to Ensembl Protein Viewer:ENSP00000438280.1Re-query CCDS DB by Nucleotide ID:ENST00000536465Re-query CCDS DB by Protein ID:ENSP00000438280
Original member Current member EBI ENST00000538313.5 ENSP00000441505.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538313.5Link to Ensembl Protein Viewer:ENSP00000441505.1Re-query CCDS DB by Nucleotide ID:ENST00000538313Re-query CCDS DB by Protein ID:ENSP00000441505
Original member Current member NCBI NM_032918.3 NP_116307.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032918.3Link to Protein Sequence:NP_116307.1Re-query CCDS DB by Nucleotide ID:NM_032918Re-query CCDS DB by Protein ID:NP_116307Link to BLAST:NP_116307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116307.1 199 Q96A58-1 199 100% 0 0

Chromosomal Locations for CCDS 8673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 15109110 15109517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15111344 15111417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15121063 15121119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15217429 15217489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTAAAAGTGCGGAGGTCAAACTGGCAATATTTGGGAGAGCAGGCGTGGGCAAGTCAGCTCTTGTAG
TGAGATTTCTGACCAAACGGTTCATCTGGGAATATGATCCCACCCTCGAATCAACCTACCGACACCAAGC
AACCATCGATGATGAAGTTGTTTCCATGGAGATACTAGACACTGCTGGTCAGGAAGATACCATTCAGAGG
GAGGGGCACATGCGATGGGGGGAAGGCTTTGTGCTGGTCTACGACATTACTGACCGAGGAAGTTTTGAGG
AAGTGCTGCCACTTAAGAACATCCTAGATGAGATCAAAAAGCCCAAGAATGTGACTCTCATCTTGGTTGG
AAACAAAGCTGACTTGGACCACTCCAGGCAGGTTAGCACAGAAGAAGGAGAGAAGCTGGCCACAGAATTG
GCTTGTGCTTTTTACGAGTGCTCTGCCTGCACTGGAGAAGGGAACATCACAGAGATATTCTATGAATTGT
GTCGAGAGGTGCGTCGCCGGAGGATGGTGCAGGGCAAGACGAGGCGACGCAGCTCCACCACGCATGTCAA
GCAAGCCATTAACAAGATGCTCACCAAAATCAGTAGTTAG

Translation (199 aa):
MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQR
EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL
ACAFYECSACTGEGNITEIFYELCREVRRRRMVQGKTRRRSSTTHVKQAINKMLTKISS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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