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Report for CCDS86641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86641.1 Public Homo sapiens 17 SYNGR2 24 110 108 CCDS HistoryNCBI Gene:9144Re-query CCDS DB by CCDS ID:86641.1Re-query CCDS DB by GeneID:9144See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588282.5 ENSP00000467600.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588282.5Link to Ensembl Protein Viewer:ENSP00000467600.1Re-query CCDS DB by Nucleotide ID:ENST00000588282Re-query CCDS DB by Protein ID:ENSP00000467600
Original member Current member NCBI NM_001363778.1 NP_001350707.1 Accepted alive Link to Nucleotide Sequence:NM_001363778.1Link to Protein Sequence:NP_001350707.1Re-query CCDS DB by Nucleotide ID:NM_001363778Re-query CCDS DB by Protein ID:NP_001350707Link to BLAST:NP_001350707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350707.1 275 O43760-2 275 100% 0 0

Chromosomal Locations for CCDS 86641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78168617 78168715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78170817 78171054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78171510 78172000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGAGAGCGGGGCCTACGGCGCGGCCAAGGCGGGCGGCTCCTTCGACCTGCGGCGCTTCCTGACGCAGC
CGCAGGTGGTGGCGCGCGCCGTGTGCTTGGTCTTCGCCTTGATCGTGTTCTCCTGCATCTATGGTGAGGG
CTACAGCAATGCCCACGAGTCTAAGCAGATGTACTGCGTGTTCAACCGCAACGAGGATGCCTGCCGCTAT
GGCAGTGCCATCGGGGTGCTGGCCTTCCTGGCCTCGGCCTTCTTCTTGGTGGTCGACGCGTATTTCCCCC
AGATCAGCAACGCCACTGACCGCAAGTACCTGGTCATTGGTGACCTGCTCTTCTCAGCTCTCTGGACCTT
CCTGTGGTTTGTTGGTTTCTGCTTCCTCACCAACCAGTGGGCAGTCACCAACCCGAAGGACGTGCTGGTG
GGGGCCGACTCTGTGAGGGCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGTAGGATGGCCAG
GGGCCGGTTCTTGGGTCAAGGGTGGTGGAGGGTGGGGTCCCCCACCCACCTGTACCCTGCTGTGCTCCCC
CTGCAGGGTGTGCTGGCCTCCCTGGCCTACCAGCGCTACAAGGCTGGCGTGGACGACTTCATCCAGAATT
ACGTTGACCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAGGTGCATCTGTGGACAACTACCA
ACAGCCACCCTTCACCCAGAACGCGGAGACCACCGAGGGCTACCAGCCGCCCCCTGTGTACTGAGCGGCG
GTTAGCGTGGGAAGGGGGACAGAGAGGGCCCTCCCCTCTGCCCTGGACTTTCCCATGA

Translation (275 aa):
MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRY
GSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDVLV
GADSVRAAITFSFFSIFSWVGWPGAGSWVKGGGGWGPPPTCTLLCSPCRVCWPPWPTSATRLAWTTSSRI
TLTPLRTPTLPTPPTQVHLWTTTNSHPSPRTRRPPRATSRPLCTERRLAWEGGQRGPSPLPWTFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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