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Report for CCDS86579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86579.1 Public Homo sapiens 17 TRIM16 24 110 108 CCDS HistoryNCBI Gene:10626Re-query CCDS DB by CCDS ID:86579.1Re-query CCDS DB by GeneID:10626See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416464.6 ENSP00000399918.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416464.6Link to Ensembl Protein Viewer:ENSP00000399918.2Re-query CCDS DB by Nucleotide ID:ENST00000416464Re-query CCDS DB by Protein ID:ENSP00000399918
Original member Current member NCBI NM_001348121.1 NP_001335050.1 Accepted alive Link to Nucleotide Sequence:NM_001348121.1Link to Protein Sequence:NP_001335050.1Re-query CCDS DB by Nucleotide ID:NM_001348121Re-query CCDS DB by Protein ID:NP_001335050Link to BLAST:NP_001335050.1
Original member Current member NCBI NM_001348122.1 NP_001335051.1 Accepted alive Link to Nucleotide Sequence:NM_001348122.1Link to Protein Sequence:NP_001335051.1Re-query CCDS DB by Nucleotide ID:NM_001348122Re-query CCDS DB by Protein ID:NP_001335051Link to BLAST:NP_001335051.1

Chromosomal Locations for CCDS 86579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15628615 15629198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15631619 15631714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15632509 15632674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15636036 15636269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15642721 15642816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15680865 15680953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15683036 15683075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGATTATGGAGGATTGGACCTGCAAACTCCAGAACAGAGTTCTGCCCTCTGAGGACCCTGCCCTTTCCC
AAAAGGGGTATCTTAAGAAGGAAAATATGGCTGCTCTTTGCCGGACAGCAGAGTCCCAGGCTGAACTCCA
GTGCACCCAGTTAGACTTGGAGCGGAAACTCAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAAC
CAAAAGTCTGTTCTGGTGTCGGTGTCAGAGGTCAAAGCGGTGGCTGAAATGCAGTTTGGGGAACTCCTTG
CTGCTGTGAGGAAGGCCCAGGCCAATGTGATGCTCTTCTTAGAGGAGAAGGAGCAAGCTGCGCTGAGCCA
GGCCAACGGTATCAAGGCCCACCTGGAGTACAGGAGTGCCGAGATGGAGAAGAGCAAGCAGGAGCTGGAG
AGGATGGCGGCCATCAGCAACACTGTCCAGTTCTTGGAGGAGTACTGCAAGTTTAAGAACACTGAAGACA
TCACCTTCCCTAGTGTTTACGTAGGGCTGAAGGATAAACTCTCGGGCATCCGCAAAGTTATCACGGAATC
CACTGTACACTTAATCCAGTTGCTGGAGAACTATAAGAAAAAGCTCCAGGAGTTTTCCAAGGAAGAGGAG
TATGACATCAGAACTCAAGTGTCTGCCGTTGTTCAGCGCAAATATTGGACTTCCAAACCTGAGCCCAGCA
CCAGGGAACAGTTCCTCCAATATGCGTATGACATCACGTTTGACCCGGACACAGCACACAAGTATCTCCG
GCTGCAGGAGGAGAACCGCAAGGTCACCAACACCACGCCCTGGGAGCATCCCTACCCGGACCTCCCCAGC
AGGTTCCTGCACTGGCGGCAGGTGCTGTCCCAGCAGAGTCTGTACCTGCACAGGTACTATTTTGAGGTGG
AGATCTTCGGGGCAGGCACCTATGTTGGCCTGACCTGCAAAGGCATCGACCGGAAAGGGGAGGAGCGCAA
CAGTTGCATTTCCGGAAACAACTTCTCCTGGAGCCTCCAATGGAACGGGAAGGAGTTCACGGCCTGGTAC
AGTGACATGGAGACCCCACTCAAAGCTGGCCCTTTCCGGAGGCTCGGGGTCTATATCGACTTCCCGGGAG
GGATCCTTTCCTTCTATGGCGTAGAGTATGATACCATGACTCTGGTTCACAAGTTTGCCTGCAAATTTTC
AGAACCAGTCTATGCTGCCTTCTGGCTTTCCAAGAAGGAAAACGCCATCCGGATTGTAGATCTGGGAGAG
GAACCCGAGAAGCCAGCACCGTCCTTGGTGGGGACTGCTCCCTAG

Translation (434 aa):
MIMEDWTCKLQNRVLPSEDPALSQKGYLKKENMAALCRTAESQAELQCTQLDLERKLKLNENAISRLQAN
QKSVLVSVSEVKAVAEMQFGELLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELE
RMAAISNTVQFLEEYCKFKNTEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQEFSKEEE
YDIRTQVSAVVQRKYWTSKPEPSTREQFLQYAYDITFDPDTAHKYLRLQEENRKVTNTTPWEHPYPDLPS
RFLHWRQVLSQQSLYLHRYYFEVEIFGAGTYVGLTCKGIDRKGEERNSCISGNNFSWSLQWNGKEFTAWY
SDMETPLKAGPFRRLGVYIDFPGGILSFYGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENAIRIVDLGE
EPEKPAPSLVGTAP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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