NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86578.1 Public Homo sapiens 17 TRIM16 24 110 108 CCDS HistoryNCBI Gene:10626Re-query CCDS DB by CCDS ID:86578.1Re-query CCDS DB by GeneID:10626See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000577886.5 ENSP00000462903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577886.5Link to Ensembl Protein Viewer:ENSP00000462903.1Re-query CCDS DB by Nucleotide ID:ENST00000577886Re-query CCDS DB by Protein ID:ENSP00000462903
Original member Current member NCBI NM_001348124.1 NP_001335053.1 Accepted alive Link to Nucleotide Sequence:NM_001348124.1Link to Protein Sequence:NP_001335053.1Re-query CCDS DB by Nucleotide ID:NM_001348124Re-query CCDS DB by Protein ID:NP_001335053Link to BLAST:NP_001335053.1
Original member Current member NCBI NM_001348125.1 NP_001335054.1 Accepted alive Link to Nucleotide Sequence:NM_001348125.1Link to Protein Sequence:NP_001335054.1Re-query CCDS DB by Nucleotide ID:NM_001348125Re-query CCDS DB by Protein ID:NP_001335054Link to BLAST:NP_001335054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335053.1 348 O95361-2 348 100% 0 0
NP_001335054.1 348 O95361-2 348 100% 0 0

Chromosomal Locations for CCDS 86578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15628615 15629198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15631619 15631714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15632509 15632674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15636036 15636236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCAGTTTGGGGAACTCCTTGCTGCTGTGAGGAAGGCCCAGGCCAATGTGATGCTCTTCTTAGAGGAGA
AGGAGCAAGCTGCGCTGAGCCAGGCCAACGGTATCAAGGCCCACCTGGAGTACAGGAGTGCCGAGATGGA
GAAGAGCAAGCAGGAGCTGGAGAGGATGGCGGCCATCAGCAACACTGTCCAGTTCTTGGAGGAGTACTGC
AAGTTTAAGAACACTGAAGACATCACCTTCCCTAGTGTTTACGTAGGGCTGAAGGATAAACTCTCGGGCA
TCCGCAAAGTTATCACGGAATCCACTGTACACTTAATCCAGTTGCTGGAGAACTATAAGAAAAAGCTCCA
GGAGTTTTCCAAGGAAGAGGAGTATGACATCAGAACTCAAGTGTCTGCCGTTGTTCAGCGCAAATATTGG
ACTTCCAAACCTGAGCCCAGCACCAGGGAACAGTTCCTCCAATATGCGTATGACATCACGTTTGACCCGG
ACACAGCACACAAGTATCTCCGGCTGCAGGAGGAGAACCGCAAGGTCACCAACACCACGCCCTGGGAGCA
TCCCTACCCGGACCTCCCCAGCAGGTTCCTGCACTGGCGGCAGGTGCTGTCCCAGCAGAGTCTGTACCTG
CACAGGTACTATTTTGAGGTGGAGATCTTCGGGGCAGGCACCTATGTTGGCCTGACCTGCAAAGGCATCG
ACCGGAAAGGGGAGGAGCGCAACAGTTGCATTTCCGGAAACAACTTCTCCTGGAGCCTCCAATGGAACGG
GAAGGAGTTCACGGCCTGGTACAGTGACATGGAGACCCCACTCAAAGCTGGCCCTTTCCGGAGGCTCGGG
GTCTATATCGACTTCCCGGGAGGGATCCTTTCCTTCTATGGCGTAGAGTATGATACCATGACTCTGGTTC
ACAAGTTTGCCTGCAAATTTTCAGAACCAGTCTATGCTGCCTTCTGGCTTTCCAAGAAGGAAAACGCCAT
CCGGATTGTAGATCTGGGAGAGGAACCCGAGAAGCCAGCACCGTCCTTGGTGGGGACTGCTCCCTAG

Translation (348 aa):
MQFGELLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELERMAAISNTVQFLEEYC
KFKNTEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQEFSKEEEYDIRTQVSAVVQRKYW
TSKPEPSTREQFLQYAYDITFDPDTAHKYLRLQEENRKVTNTTPWEHPYPDLPSRFLHWRQVLSQQSLYL
HRYYFEVEIFGAGTYVGLTCKGIDRKGEERNSCISGNNFSWSLQWNGKEFTAWYSDMETPLKAGPFRRLG
VYIDFPGGILSFYGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAPSLVGTAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH