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Report for CCDS86362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86362.1 Public Homo sapiens 13 ARHGEF7 24 110 108 CCDS HistoryNCBI Gene:8874Re-query CCDS DB by CCDS ID:86362.1Re-query CCDS DB by GeneID:8874See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375723.5 ENSP00000364875.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375723.5Link to Ensembl Protein Viewer:ENSP00000364875.1Re-query CCDS DB by Nucleotide ID:ENST00000375723Re-query CCDS DB by Protein ID:ENSP00000364875
Original member Current member NCBI NM_001330597.2 NP_001317526.1 Accepted alive Link to Nucleotide Sequence:NM_001330597.2Link to Protein Sequence:NP_001317526.1Re-query CCDS DB by Nucleotide ID:NM_001330597Re-query CCDS DB by Protein ID:NP_001317526Link to BLAST:NP_001317526.1
Original member Current member NCBI NM_001330598.2 NP_001317527.1 Accepted alive Link to Nucleotide Sequence:NM_001330598.2Link to Protein Sequence:NP_001317527.1Re-query CCDS DB by Nucleotide ID:NM_001330598Re-query CCDS DB by Protein ID:NP_001317527Link to BLAST:NP_001317527.1
Original member Current member NCBI NM_001354056.1 NP_001340985.1 Accepted alive Link to Nucleotide Sequence:NM_001354056.1Link to Protein Sequence:NP_001340985.1Re-query CCDS DB by Nucleotide ID:NM_001354056Re-query CCDS DB by Protein ID:NP_001340985Link to BLAST:NP_001340985.1
Original member Current member NCBI NM_001354057.2 NP_001340986.1 Accepted alive Link to Nucleotide Sequence:NM_001354057.2Link to Protein Sequence:NP_001340986.1Re-query CCDS DB by Nucleotide ID:NM_001354057Re-query CCDS DB by Protein ID:NP_001340986Link to BLAST:NP_001340986.1
Original member Current member NCBI NM_001354058.2 NP_001340987.1 Accepted alive Link to Nucleotide Sequence:NM_001354058.2Link to Protein Sequence:NP_001340987.1Re-query CCDS DB by Nucleotide ID:NM_001354058Re-query CCDS DB by Protein ID:NP_001340987Link to BLAST:NP_001340987.1
Original member Current member NCBI NM_001354059.2 NP_001340988.1 Accepted alive Link to Nucleotide Sequence:NM_001354059.2Link to Protein Sequence:NP_001340988.1Re-query CCDS DB by Nucleotide ID:NM_001354059Re-query CCDS DB by Protein ID:NP_001340988Link to BLAST:NP_001340988.1
Original member Current member NCBI NM_001354060.2 NP_001340989.1 Accepted alive Link to Nucleotide Sequence:NM_001354060.2Link to Protein Sequence:NP_001340989.1Re-query CCDS DB by Nucleotide ID:NM_001354060Re-query CCDS DB by Protein ID:NP_001340989Link to BLAST:NP_001340989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317526.1 625 Q14155-6 625 100% 0 0
NP_001317527.1 625 Q14155-6 625 100% 0 0
NP_001340985.1 625 Q14155-6 625 100% 0 0
NP_001340986.1 625 Q14155-6 625 100% 0 0
NP_001340987.1 625 Q14155-6 625 100% 0 0
NP_001340988.1 625 Q14155-6 625 100% 0 0
NP_001340989.1 625 Q14155-6 625 100% 0 0

Chromosomal Locations for CCDS 86362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 111217682 111217880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111233205 111233293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111243872 111243966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111244199 111244294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111267548 111267670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111273814 111273952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111274731 111274790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111275532 111275678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111277587 111277673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111280272 111280350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111280538 111280677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111283139 111283363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111286147 111286240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111288354 111288443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 111292118 111292332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGACCGATAATAGCAACAATCAACTGGTAGTAAGAGCAAAGTTTAACTTCCAGCAGACCAATGAGGACG
AGCTTTCCTTCTCAAAAGGAGACGTCATCCATGTCACCCGTGTGGAAGAGGGAGGCTGGTGGGAGGGCAC
ACTCAACGGCCGGACCGGCTGGTTCCCCAGCAACTACGTGCGCGAGGTCAAGGCCAGCGAGAAGCCTGTG
TCTCCCAAATCAGGAACACTGAAGAGCCCTCCCAAAGGATTTGATACGACTGCCATAAACAAAAGCTATT
ACAATGTGGTGCTACAGAATATTTTAGAAACAGAAAATGAATATTCTAAAGAACTTCAGACTGTGCTTTC
AACGTACCTACGGCCATTGCAGACCAGTGAGAAGTTAAGTTCAGCAAACATTTCATATTTAATGGGAAAT
CTAGAAGAAATATGTTCTTTCCAGCAAATGCTCGTACAGTCTTTAGAAGAATGCACCAAGTTGCCCGAAG
CTCAGCAGAGAGTCGGAGGCTGCTTTTTAAACCTGATGCCACAGATGAAAACCCTGTACCTCACGTATTG
TGCCAATCACCCTTCTGCAGTGAATGTCCTCACGGAACACAGTGAGGAGTTGGGGGAGTTCATGGAGACC
AAAGGTGCCAGCAGCCCTGGGATTCTCGTGCTGACCACGGGCCTGAGCAAACCCTTCATGCGCCTGGATA
AATACCCTACGCTGCTCAAAGAGCTCGAGAGACACATGGAGGATTATCATACAGATAGACAAGATATTCA
AAAATCCATGGCTGCCTTCAAAAACCTTTCAGCCCAATGTCAAGAAGTCCGGAAGAGGAAAGAGCTTGAG
CTGCAGATCCTGACGGAAGCCATCCGGAACTGGGAGGGCGATGACATTAAAACTCTGGGCAACGTCACTT
ACATGTCCCAGGTCCTGATTCAGTGTGCCGGAAGTGAGGAAAAGAATGAAAGATATCTTCTACTCTTCCC
AAATGTTTTGCTAATGTTGTCTGCCAGTCCTAGGATGAGTGGCTTTATCTATCAGGGAAAGCTTCCAACG
ACAGGAATGACAATCACAAAGCTTGAGGACAGTGAAAATCATAGAAATGCATTTGAAATATCAGGGAGCA
TGATTGAGCGGATATTAGTGTCGTGCAACAACCAGCAGGATCTGCAGGAATGGGTGGAGCACCTACAGAA
GCAAACGAAGGTCACGTCTGTGGGAAACCCCACCATAAAGCCTCATTCAGTGCCATCTCATACCCTCCCC
TCCCACCCGGTCACTCCGTCCAGCAAGCACGCAGACAGCAAGCCCGCGCCGCTGACGCCCGCCTACCACA
CGCTGCCCCACCCCTCCCACCACGGCACCCCGCACACCACCATCAACTGGGGACCCCTGGAGCCTCCGAA
AACACCCAAGCCCTGGAGCCTGAGCTGCCTGCGGCCCGCGCCTCCCCTCCGGCCCTCAGCTGCTCTCTGC
TACAAGGAGGATCTTAGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAAGCGCAAACCTGAACGGA
AGCCTTCAGATGAGGAGTTCGCGTCCCGGAAAAGCACAGCTGCTTTGGAAGAAGATGCTCAGATTCTGAA
AGTCATTGAAGCTTACTGCACCAGCGCCAAAACAAGGCAAACACTCAATTCAACATGGCAAGGCACTGAC
CTGATGCATAATCACGTCTTGGCTGATGATGACCAACCAAGCCTAGACTCCCTGGGGCGTCGCAGTAGCC
TTTCTCGTTTGGAGCCTTCAGACCTCTCGGAAGACTCTGACTATGACAGTATATGGACAGCCCATAGTTA
CAGAATGGGTTCTACATCTCGTAAGAGCTGTTGCTCATATATCTCTCACCAGAACTAA

Translation (625 aa):
MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKASEKPV
SPKSGTLKSPPKGFDTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSSANISYLMGN
LEEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGEFMET
KGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELE
LQILTEAIRNWEGDDIKTLGNVTYMSQVLIQCAGSEEKNERYLLLFPNVLLMLSASPRMSGFIYQGKLPT
TGMTITKLEDSENHRNAFEISGSMIERILVSCNNQQDLQEWVEHLQKQTKVTSVGNPTIKPHSVPSHTLP
SHPVTPSSKHADSKPAPLTPAYHTLPHPSHHGTPHTTINWGPLEPPKTPKPWSLSCLRPAPPLRPSAALC
YKEDLSKSPKTMKKLLPKRKPERKPSDEEFASRKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTD
LMHNHVLADDDQPSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAHSYRMGSTSRKSCCSYISHQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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