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Report for CCDS86347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86347.1 Public Homo sapiens 13 HMGB1 24 110 108 CCDS HistoryNCBI Gene:3146Re-query CCDS DB by CCDS ID:86347.1Re-query CCDS DB by GeneID:3146See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326004.4 ENSP00000369904.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326004.4Link to Ensembl Protein Viewer:ENSP00000369904.1Re-query CCDS DB by Nucleotide ID:ENST00000326004Re-query CCDS DB by Protein ID:ENSP00000369904
Original member Current member EBI ENST00000399489.5 ENSP00000382412.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399489.5Link to Ensembl Protein Viewer:ENSP00000382412.1Re-query CCDS DB by Nucleotide ID:ENST00000399489Re-query CCDS DB by Protein ID:ENSP00000382412
Original member Current member NCBI NM_001363661.2 NP_001350590.1 Accepted alive Link to Nucleotide Sequence:NM_001363661.2Link to Protein Sequence:NP_001350590.1Re-query CCDS DB by Nucleotide ID:NM_001363661Re-query CCDS DB by Protein ID:NP_001350590Link to BLAST:NP_001350590.1
Original member Current member NCBI NM_001370339.1 NP_001357268.1 Accepted alive Link to Nucleotide Sequence:NM_001370339.1Link to Protein Sequence:NP_001357268.1Re-query CCDS DB by Nucleotide ID:NM_001370339Re-query CCDS DB by Protein ID:NP_001357268Link to BLAST:NP_001357268.1

Chromosomal Locations for CCDS 86347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30461683 30461688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30462538 30462712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30463207 30463352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30463531 30463680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTC
GGGAGGAGCATAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGA
GAGGTGGAAGACCATGTCTGCTAAAGAGAAAGGAAAATTTGAAGATATGGCAAAAGCGGACAAGGCCCGT
TATGAAAGAGAAATGAAAACCTATATCCCTCCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATG
CACCCAAGAGGCCTCCTTCGGCCTTCTTCCTCTTCTGCTCTGAGTATCGCCCAAAAATCAAAGGAGAACA
TCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGAATAACACTGCTGCAGATGAC
AAGCAGCCTTATGAAAAGAAGGCTGCGAAGCTGAAGGAAAAATATGAAAAGTTCTAG

Translation (158 aa):
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD
KQPYEKKAAKLKEKYEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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