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Report for CCDS862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
862.1 Public Homo sapiens 1 RSBN1 24 110 108 CCDS HistoryNCBI Gene:54665Re-query CCDS DB by CCDS ID:862.1Re-query CCDS DB by GeneID:54665See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261441.9 ENSP00000261441.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261441.9Link to Ensembl Protein Viewer:ENSP00000261441.5Re-query CCDS DB by Nucleotide ID:ENST00000261441Re-query CCDS DB by Protein ID:ENSP00000261441
Original member Current member EBI ENST00000612242.4 ENSP00000479490.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612242.4Link to Ensembl Protein Viewer:ENSP00000479490.1Re-query CCDS DB by Nucleotide ID:ENST00000612242Re-query CCDS DB by Protein ID:ENSP00000479490
Original member Current member NCBI NM_018364.5 NP_060834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018364.5Link to Protein Sequence:NP_060834.2Re-query CCDS DB by Nucleotide ID:NM_018364Re-query CCDS DB by Protein ID:NP_060834Link to BLAST:NP_060834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060834.2 802 Q5VWQ0-1 802 100% 0 0

Chromosomal Locations for CCDS 862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 113765980 113766453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113767099 113767207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113768222 113768389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113777210 113777352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113777671 113777808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113797363 113798036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113811710 113812412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGTTCATCTCTGGACGAAGAACGGCCGACAAGTGGAGGGCGGAGGAGAGACTCCAATGCCCAGCGGGCA
GTGCGCGGGCGGCGCTTGCGCGATGCGCGGACGGGGGGGCGGTCGGGCCATTTAAATGTGTGTTTGTGGG
TGAAATGGCTGCGCAGGTCGGAGCGGTGCGCGTAGTACGGGCGGTGGCGGCGCAGGAGGAGCCGGACAAA
GAGGGGAAGGAGAAACCTCATGCTGGGGTCTCCCCGCGGGGAGTTAAACGGCAGCGCCGATCTAGCAGTG
GGGGGTCTCAGGAGAAGCGGGGGCGGCCGAGCCAGGAGCCCCCTCTCGCTCCCCCTCACCGGCGGCGTCG
CAGCCGCCAACATCCTGGGCCGCTGCCGCCAACGAATGCAGCCCCAACTGTCCCAGGCCCTGTTGAGCCT
CTTCTCCTGCCGCCTCCGCCGCCACCTTCGCTGGCACCCGCCGGGCCCGCTGTCGCTGCCCCTCTCCCGG
CCCCAAGCACCTCGGCCCTCTTCACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGG
CCACAAGGAGCGGCACAAGCACCATCACCACCGCGGCCCCGATGGTGATCCCAGCTCCTGCGGAACCGAT
CTCAAGCACAAGGACAAGCAGGAAAACGGCGAGAGGACTGGAGGGGTGCCTCTGATCAAAGCCCCCAAGA
GAGAAACACCAGATGAAAATGGTAAAACCCAGAGAGCCGATGATTTTGTCTTGAAGAAAATAAAGAAGAA
AAAGAAAAAGAAACACCGAGAAGACATGCGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACC
GTCTGTGCTGGCCTGACCCGCATCAGTAAAGAAATTCTCACCCAAGGACAAATAAATAGCACTTCAGGAC
TTAATAAGGAGTCCTTCAGGTATCTGAAAGATGAACAGCTGTGCCGATTAAATTTGGGTATGCAAGAATA
TCGGGTACCCCAGGGAGTACAAACACCTTTTATGACTCACCAGGAACATTCTATTCGTAGAAATTTCTTA
AAAACAGGTACTAAATTTAGCAACTTTATTCATGAGGAACACCAGTCCAATGGTGGTGCTCTTGTCCTTC
ATGCTTACATGGATGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCTGAGGAGTTTCTTGC
TTTGACATTCAGTGAAAATGAGAAAAATGCTGCTTACTATGCTTTAGCAATAGTGCATGGAGCGGCTGCT
TATCTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTCCCCAACACTCCAGTGAAAATGGAAATTCTGG
GCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCACACTCAGGTCAACAGGACATACTGCTGTGG
CACCTACCGAGCAGGTCCTATGCGGCAGATAAGTCTCGTTGGAGCAGTAGATGAAGAAGTTGGTGATTAT
TTCCCAGAGTTCCTTGATATGTTAGAAGAATCACCATTTCTGAAAATGACTTTGCCCTGGGGTACACTTT
CTAGCCTCCGACTCCAGTGTAGGTCCCAGAGTGATGATGGGCCTATAATGTGGGTAAGGCCAGGAGAACA
GATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACGATCAATGAATGAAATAAAAAAT
CTCCAGTACCTACCTCGGACCAGTGAACCCCGCGAAGTTCTCTTTGAAGATAGGACTAGAGCTCATGCTG
ATCATGTCGGTCAGGGGTTTGACTGGCAGAGTACGGCTGCTGTTGGAGTTTTGAAAGCTGTACAATTTGG
TGAATGGAGTGACCAACCTCGCATAACCAAAGATGTGATTTGTTTTCATGCTGAGGATTTTACTGATGTT
GTACAAAGACTTCAGTTAGATCTTCATGAACCTCCAGTTTCCCAGTGCGTACAGTGGGTAGATGAAGCTA
AACTAAACCAAATGAGGCGGGAAGGCATTCGTTATGCTAGAATTCAGCTTTGCGACAATGATATCTACTT
CATCCCTAGAAATGTCATTCATCAGTTCAAAACAGTTTCGGCGGTGTGCAGCTTAGCCTGGCATATAAGG
CTTAAACAGTACCACCCTGTTGTGGAAGCCACTCAAAACACAGAAAGCAATTCTAACATGGACTGTGGTT
TAACTGGAAAGCGAGAATTAGAAGTTGACTCCCAATGTGTGAGGATAAAAACTGAATCTGAAGAAGCATG
CACAGAGATTCAGCTGTTAACAACTGCTTCATCATCTTTCCCACCTGCATCAGAACTTAATCTACAGCAA
GATCAGAAGACTCAGCCTATTCCAGTTTTAAAAGTGGAAAGTAGACTGGACTCTGACCAGCAACACAATC
TGCAAGAACATTCAACCACTTCTGTGTGA

Translation (802 aa):
MFISGRRTADKWRAEERLQCPAGSARAALARCADGGAVGPFKCVFVGEMAAQVGAVRVVRAVAAQEEPDK
EGKEKPHAGVSPRGVKRQRRSSSGGSQEKRGRPSQEPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEP
LLLPPPPPPSLAPAGPAVAAPLPAPSTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGPDGDPSSCGTD
LKHKDKQENGERTGGVPLIKAPKRETPDENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQT
VCAGLTRISKEILTQGQINSTSGLNKESFRYLKDEQLCRLNLGMQEYRVPQGVQTPFMTHQEHSIRRNFL
KTGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERFSEEFLALTFSENEKNAAYYALAIVHGAAA
YLPDFLDYFAFNFPNTPVKMEILGKKDIETTTISNFHTQVNRTYCCGTYRAGPMRQISLVGAVDEEVGDY
FPEFLDMLEESPFLKMTLPWGTLSSLRLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIKN
LQYLPRTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGEWSDQPRITKDVICFHAEDFTDV
VQRLQLDLHEPPVSQCVQWVDEAKLNQMRREGIRYARIQLCDNDIYFIPRNVIHQFKTVSAVCSLAWHIR
LKQYHPVVEATQNTESNSNMDCGLTGKRELEVDSQCVRIKTESEEACTEIQLLTTASSSFPPASELNLQQ
DQKTQPIPVLKVESRLDSDQQHNLQEHSTTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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