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Report for CCDS861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
861.1 Public Homo sapiens 1 PHTF1 24 110 108 CCDS HistoryNCBI Gene:10745Re-query CCDS DB by CCDS ID:861.1Re-query CCDS DB by GeneID:10745See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369604.6 ENSP00000358617.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369604.6Link to Ensembl Protein Viewer:ENSP00000358617.1Re-query CCDS DB by Nucleotide ID:ENST00000369604Re-query CCDS DB by Protein ID:ENSP00000358617
Original member Current member EBI ENST00000393357.6 ENSP00000377025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393357.6Link to Ensembl Protein Viewer:ENSP00000377025.2Re-query CCDS DB by Nucleotide ID:ENST00000393357Re-query CCDS DB by Protein ID:ENSP00000377025
Original member Current member NCBI NM_001323041.2 NP_001309970.1 Accepted alive Link to Nucleotide Sequence:NM_001323041.2Link to Protein Sequence:NP_001309970.1Re-query CCDS DB by Nucleotide ID:NM_001323041Re-query CCDS DB by Protein ID:NP_001309970Link to BLAST:NP_001309970.1
Original member Current member NCBI NM_001323042.2 NP_001309971.1 Accepted alive Link to Nucleotide Sequence:NM_001323042.2Link to Protein Sequence:NP_001309971.1Re-query CCDS DB by Nucleotide ID:NM_001323042Re-query CCDS DB by Protein ID:NP_001309971Link to BLAST:NP_001309971.1
Original member Current member NCBI NM_001323043.2 NP_001309972.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001323043.2Link to Protein Sequence:NP_001309972.1Re-query CCDS DB by Nucleotide ID:NM_001323043Re-query CCDS DB by Protein ID:NP_001309972Link to BLAST:NP_001309972.1
Original member Current member NCBI NM_006608.3 NP_006599.2 Accepted alive Link to Nucleotide Sequence:NM_006608.3Link to Protein Sequence:NP_006599.2Re-query CCDS DB by Nucleotide ID:NM_006608Re-query CCDS DB by Protein ID:NP_006599Link to BLAST:NP_006599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309970.1 762 Q9UMS5-1 762 100% 0 0
NP_001309971.1 762 Q9UMS5-1 762 100% 0 0
NP_001309972.1 762 Q9UMS5-1 762 100% 0 0
NP_006599.2 762 Q9UMS5-1 762 100% 0 0

Chromosomal Locations for CCDS 861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 113697705 113697725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113698262 113698387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113699704 113699799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113700794 113700949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113704081 113704167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113704666 113704797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113705890 113706162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113706594 113706722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113710254 113710475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113711746 113711835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113711940 113712113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113713279 113713438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113724759 113724893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113726418 113726574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113738110 113738268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113738730 113738799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113757699 113757755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113758659 113758703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2289 nt):
ATGGCCTCAAATGAGAGAGATGCTATATCGTGGTACCAAAAGAAGATTGGAGCCTACGATCAGCAGATAT
GGGAAAAGTCAATCGAACAGACTCAGATTAAGGGTTTGAAAAACAAACCGAAAAAGATGGGCCACATAAA
GCCAGACTTGATTGACGTTGACTTAATCAGAGGGTCAACATTTGCCAAAGCAAAACCTGAAATTCCATGG
ACATCTCTGACTCGGAAGGGGCTTGTTCGAGTTGTATTTTTTCCATTGTTCAGCAATTGGTGGATTCAGG
TTACCTCTTTAAGAATCTTTGTTTGGCTGTTACTACTTTATTTCATGCAAGTTATAGCAATTGTCTTATA
TTTGATGATGCCTATTGTGAACATAAGTGAAGTACTTGGACCCTTGTGCCTTATGCTACTCATGGGAACT
GTCCACTGTCAAATTGTGTCTACTCAGATAACAAGACCATCAGGAAACAATGGAAATCGAAGAAGAAGAA
AATTACGAAAAACTGTAAATGGTGATGGGAGCCGAGAAAATGGAAATAACTCCTCTGATAAAGTCAGAGG
AATAGAAACTTTGGAATCTGTACCCATTATTGGTGGTTTTTGGGAGACTATCTTTGGCAACAGGATTAAA
AGAGTAAAATTAATATCTAACAAAGGGACTGAAACTGACAATGACCCAAGTTGTGTCCATCCTATCATTA
AGAGGAGACAATGTCGACCAGAGATTAGAATGTGGCAAACAAGAGAGAAAGCAAAATTTTCAGATGGAGA
AAAGTGCCGTAGGGAGGCTTTTAGGCGTTTGGGTAATGGGGTGTCTGATGACCTGTCAAGTGAAGAAGAT
GGTGAAGCACGGACACAGATGATATTATTGCGTAGGAGTGTGGAAGGGGCCTCAAGTGACAATGGTTGTG
AAGTTAAGAATAGAAAATCAATACTTTCAAGGCACCTAAACTCTCAGGTAAAGAAAACCACTACAAGGTG
GTGTCATATTGTGCGGGATTCAGATAGTCTGGCTGAATCAGAATTTGAATCAGCAGCCTTCAGCCAGGGC
TCTAGATCGGGTGTGAGTGGTGGCTCTCGAAGCCTCAACATGTCAAGAAGAGACTCAGAAAGCACCCGCC
ATGACTCGGAGACTGAGGACATGTTATGGGACGACCTGCTACATGGCCCAGAGTGCCGGTCATCTGTCAC
CAGTGACAGTGAGGGGGCCCATGTGAATACCCTTCACTCAGGGACCAAACGTGACCCCAAAGAGGATGTT
TTTCAGCAGAATCATTTATTCTGGCTTCAGAATTCAAGTCCTTCCTCTGATCGAGTTAGTGCAATAATCT
GGGAGGGGAATGAGTGCAAAAAGATGGATATGTCTGTGTTGGAAATAAGTGGCATCATCATGAGCAGGGT
CAATGCCTATCAGCAAGGAGTAGGTTATCAGATGCTGGGAAATGTTGTCACTATTGGATTAGCATTTTTT
CCATTCTTACATCGACTTTTCCGTGAGAAGAGCCTTGACCAACTAAAGTCCATTTCAGCTGAGGAGATCT
TGACTCTCTTTTGTGGGGCACCACCTGTTACACCTATTATTGTTTTGTCGATAATTAATTTTTTTGAAAG
ATTGTGTCTTACTTGGATGTTTTTTTTCATGATGTGTGTGGCAGAGAGAACATATAAACAGAGATTTTTA
TTTGCAAAACTCTTCAGCCATATTACTTCTGCCAGGAAAGCTAGGAAATATGAAATACCTCATTTCAGAC
TTAAGAAGGTGGAGAATATTAAAATATGGTTATCACTGCGTTCCTATCTAAAGAGACGGGGGCCACAGCG
TTCAGTTGATGTGGTTGTATCCTCGGTTTTCCTACTGACACTTTCGATTGCTTTCATTTGTTGTGCTCAG
GTTCTCCAAGGACATAAAACTTTCCTGAATGATGCTTATAACTGGGAGTTTTTGATCTGGGAAACAGCTT
TACTACTTTTTTTATTGCGTCTGGCCTCACTGGGGTCTGAAACCAATAAGAAATACAGCAATGTTTCAAT
ATTACTTACAGAACAGATTAATTTATATCTTAAGATGGAAAAAAAGCCAAATAAGAAAGAACAGCTTACT
CTAGTAAACAATGTATTAAAGCTGTCCACCAAGTTGTTGAAAGAGCTGGACACACCATTTAGACTCTATG
GACTGACAATGAATCCCTTAATCTACAATATCACAAGAGTAGTTATCCTTTCTGCTGTCTCAGGTGTTAT
AAGTGATCTTCTAGGATTTAATATAAGACTGTGGAAAATTAAATCATAA

Translation (762 aa):
MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPW
TSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVWLLLLYFMQVIAIVLYLMMPIVNISEVLGPLCLMLLMGT
VHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIK
RVKLISNKGTETDNDPSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEKCRREAFRRLGNGVSDDLSSEED
GEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDSDSLAESEFESAAFSQG
SRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDV
FQQNHLFWLQNSSPSSDRVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFF
PFLHRLFREKSLDQLKSISAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFL
FAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQ
VLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLT
LVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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