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Report for CCDS85943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85943.1 Public Homo sapiens 1 RAB42 24 110 108 CCDS HistoryNCBI Gene:115273Re-query CCDS DB by CCDS ID:85943.1Re-query CCDS DB by GeneID:115273See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000465518.3 ENSP00000491546.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000465518.3Link to Ensembl Protein Viewer:ENSP00000491546.1Re-query CCDS DB by Nucleotide ID:ENST00000465518Re-query CCDS DB by Protein ID:ENSP00000491546
Original member Current member NCBI NM_001193532.3 NP_001180461.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193532.3Link to Protein Sequence:NP_001180461.1Re-query CCDS DB by Nucleotide ID:NM_001193532Re-query CCDS DB by Protein ID:NP_001180461Link to BLAST:NP_001180461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180461.1 218 Q8N4Z0-2 218 100% 0 0

Chromosomal Locations for CCDS 85943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28592512 28592744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28593694 28594117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGAGGCCGAGGGCTGCCGCTACCAATTTCGGGTCGCGCTGCTGGGGGACGCGGCGGTGGGCAAGACGT
CGCTGCTGCGGAGCTACGTGGCAGGCGCGCCTGGCGCCCCGGAGCCGGAGCCCGAGCCCGAGCCCACGGT
GGGCGCCGAGTGCTACCGCCGCGCGCTGCAGCTGCGGGCCGGGCCGCGGGTCAAGCTGCAACTCTGGGAC
ACCGCGGGCCACGAGCGCTTCAGGTGCATCACCAGGTCCTTTTACCGGAATGTGGTGGGTGTCCTGCTGG
TCTTTGATGTGACAAACAGGAAGTCCTTTGAACACATCCAAGACTGGCACCAGGAGGTCATGGCCACTCA
GGGCCCGGACAAGGTCATCTTCCTGCTGGTTGGCCACAAGAGTGACCTGCAGAGCACCCGCTGTGTCTCA
GCCCAGGAGGCCGAGGAGCTAGCTGCCTCCCTGGGCATGGCCTTCGTGGAGACCTCGGTTAAAAACAACT
GCAATGTGGACCTGGCCTTTGACACCCTCGCTGATGCTATCCAGCAGGCCCTGCAGCAGGGGGACATCAA
GCTAGAAGAGGGCTGGGGGGGTGTCCGGCTCATCCACAAGACCCAAATCCCCAGGTCCCCCAGCAGGAAG
CAGCACTCAGGCCCATGCCAGTGTTGA

Translation (218 aa):
MEAEGCRYQFRVALLGDAAVGKTSLLRSYVAGAPGAPEPEPEPEPTVGAECYRRALQLRAGPRVKLQLWD
TAGHERFRCITRSFYRNVVGVLLVFDVTNRKSFEHIQDWHQEVMATQGPDKVIFLLVGHKSDLQSTRCVS
AQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRK
QHSGPCQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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