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Report for CCDS85823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85823.1 Public Mus musculus X Map7d2 23 108 98 CCDS HistoryNCBI Gene:78283Re-query CCDS DB by CCDS ID:85823.1Re-query CCDS DB by GeneID:78283See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112470.2 ENSMUSP00000108089.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112470.2Link to Ensembl Protein Viewer:ENSMUSP00000108089.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112470Re-query CCDS DB by Protein ID:ENSMUSP00000108089
Original member Current member NCBI NM_001313752.1 NP_001300681.1 Accepted alive Link to Nucleotide Sequence:NM_001313752.1Link to Protein Sequence:NP_001300681.1Re-query CCDS DB by Nucleotide ID:NM_001313752Re-query CCDS DB by Protein ID:NP_001300681Link to BLAST:NP_001300681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300681.1 296 A2AG50-3 296 100% 0 0

Chromosomal Locations for CCDS 85823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 159459393 159459483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159462114 159462224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159469963 159470093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159472825 159472949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159482078 159482376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159482960 159483086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159486426 159486432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGATGCGCCGGTCCCTGGAGCGTACACAACAGCTAGAGCTGAAGAAGAAGTGCTCATGGGCAGGATCAC
CAGGGCCTGGCGGACGTGATGCATGTGACAAACTTTCAACATCAACCATGAATTTGCCAAAGCAGACGGA
GTCTCCTATGAGTAAACACCTGTCTTCATCCACCGTGGCAATATCTTATTCCCCAGACCGAGCTCTCGGG
AGCCCTCTCAAATCTTCATACAAGTCCTCTCCAACCCGGACCACTGAGAAAAAGAAGAATACACCTATAT
CTGCCATGGGAGATGCTGGGAAGGGAGCCATGGCTGGAGGAGAGCCTTCACAGATGGAGAAAATGAAGAA
GGGGCGAGTGGCAACTTCTGCTGCTTCTGGGGGTCATGGGTCCCCACTGAGAAGATGCGAGCCTCCTGAA
GATATTTCCAAGAGGTTGTCTTCTCCTGTGAAATCCAAGATAACTTCAAAAACATATCCACAGTCGCCAA
AGACAGCGAAGCCCACATACTTAGGGTCTCCTGTGAAGTATTACTTTCCACCCATTGCAAACGAAGAAAC
ACCAAAGAAGAAGGCAGAGAAGGAGAAGAGAAATAAGGAAAAGGAAGGTGCCCCTGGTCAGCAGAGCACT
GTCCTACCTAGAGAAGAAAGCCTAGAGAAGCGCATGGCTGACAAGTATGCCACCGAGAAGTATGTAGCAG
ATAAGCATGCAACTGAGAAACATTCTGCCCCTGGAGGAAAGGCTGAGCACAGTGCAGGAAAACCCACAGC
AGGCACCACTGATGCAGGAGAGGCTGCAAAGATCCTAGCTGAAAAGAGACGTCAGGCTCGGCTACAGAAG
GAACAAGAGGAGCAAGAGCGACTGGAAAAGGAAGAACGAGAAAGAATGTGA

Translation (296 aa):
MMRRSLERTQQLELKKKCSWAGSPGPGGRDACDKLSTSTMNLPKQTESPMSKHLSSSTVAISYSPDRALG
SPLKSSYKSSPTRTTEKKKNTPISAMGDAGKGAMAGGEPSQMEKMKKGRVATSAASGGHGSPLRRCEPPE
DISKRLSSPVKSKITSKTYPQSPKTAKPTYLGSPVKYYFPPIANEETPKKKAEKEKRNKEKEGAPGQQST
VLPREESLEKRMADKYATEKYVADKHATEKHSAPGGKAEHSAGKPTAGTTDAGEAAKILAEKRRQARLQK
EQEEQERLEKEERERM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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